Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_J22
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.5  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    26   8.5  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 798 WRGGGGXXXGXGGGFXGGXXXXXXXPXGF 712
           + GG G   G  GGF GG       P GF
Sbjct: 233 FEGGPGGFGGGPGGFGGGLGGFGGGPGGF 261



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 792 GGGGXXXGXGGGFXGGXXXXXXXPXGF 712
           GG G   G  GGF GG       P GF
Sbjct: 214 GGEGHHHGGHGGFGGGPGGFEGGPGGF 240



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 792 GGGGXXXGXGGGFXGGXXXXXXXPXGF 712
           GG G   G  GGF GG       P GF
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGF 247


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/49 (26%), Positives = 14/49 (28%)
 Frame = +2

Query: 647 RXPXAPPPGQPXXXRGXIXXXXNPXGXXXXXXXPPXXPPPXPXXXPPPP 793
           + P  PPP               P         PP  PP      PPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 492 VXGRGSGXAPNXQTAXPRAXADSXMQXXXPTPPPGXET 379
           V  + S  AP+   + PR    S  +   P+PP G ++
Sbjct: 452 VANQNSSSAPSVPVSAPRLSGKSASRNHVPSPPKGTKS 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,365,560
Number of Sequences: 5004
Number of extensions: 12825
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)