Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_J22
(911 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 36 0.040
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 36 0.040
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 36 0.040
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 30 2.6
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 30 2.6
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 2.6
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 30 2.6
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 30 2.6
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 30 2.6
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.6
AC024838-7|AAF60820.1| 381|Caenorhabditis elegans Hypothetical ... 29 4.6
AC024838-3|AAF60821.1| 381|Caenorhabditis elegans Hypothetical ... 29 4.6
U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical pr... 29 6.1
L25598-5|AAM15550.1| 113|Caenorhabditis elegans Calpain family ... 29 6.1
L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family ... 29 6.1
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 29 6.1
L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family ... 29 6.1
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 35.9 bits (79), Expect = 0.040
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +2
Query: 653 PXAPPPGQPXXXRGXIXXXXNPXGXXXXXXXPPXXPPPXPXXXPPPP 793
P PPPG G P G PP PPP PPPP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/47 (36%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Frame = +2
Query: 662 PPPGQPXXXRGXIXXXXNPXGXXXXXXXPPXXPPP---XPXXXPPPP 793
PPPG P G P G PP PPP P PPP
Sbjct: 715 PPPGLPPITGGP-PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 35.9 bits (79), Expect = 0.040
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +2
Query: 653 PXAPPPGQPXXXRGXIXXXXNPXGXXXXXXXPPXXPPPXPXXXPPPP 793
P PPPG G P G PP PPP PPPP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/47 (36%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Frame = +2
Query: 662 PPPGQPXXXRGXIXXXXNPXGXXXXXXXPPXXPPP---XPXXXPPPP 793
PPPG P G P G PP PPP P PPP
Sbjct: 715 PPPGLPPITGGP-PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 35.9 bits (79), Expect = 0.040
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +2
Query: 653 PXAPPPGQPXXXRGXIXXXXNPXGXXXXXXXPPXXPPPXPXXXPPPP 793
P PPPG G P G PP PPP PPPP
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 356
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/47 (36%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Frame = +2
Query: 662 PPPGQPXXXRGXIXXXXNPXGXXXXXXXPPXXPPP---XPXXXPPPP 793
PPPG P G P G PP PPP P PPP
Sbjct: 298 PPPGLPPITGGP-PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 343
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +2
Query: 653 PXAPPPGQPXXXRGXIXXXXNPXGXXXXXXXPPXXPPPXPXXXPPPP 793
P PPP P + P PP PP PPPP
Sbjct: 766 PPPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPPPP 812
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +2
Query: 653 PXAPPPGQPXXXRGXIXXXXNPXGXXXXXXXPPXXPPPXPXXXPPPP 793
P PPP P + P PP PP PPPP
Sbjct: 766 PPPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPPPP 812
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 746 PPXXPPPXPXXXPPPP 793
PP PPP P PPPP
Sbjct: 354 PPAPPPPPPPPPPPPP 369
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 746 PPXXPPPXPXXXPPPP 793
PP PPP P PPPP
Sbjct: 138 PPHYPPPPPHYPPPPP 153
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 746 PPXXPPPXPXXXPPPP 793
PP PPP P PPPP
Sbjct: 63 PPPPPPPPPPMCPPPP 78
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 746 PPXXPPPXPXXXPPPP 793
PP PPP P PPPP
Sbjct: 64 PPPPPPPPPMCPPPPP 79
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 746 PPXXPPPXPXXXPPPP 793
PP PPP P PPPP
Sbjct: 72 PPPPPPPMPCPPPPPP 87
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 746 PPXXPPPXPXXXPPPP 793
PP PPP P PPPP
Sbjct: 2 PPPPPPPPPPPPPPPP 17
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 746 PPXXPPPXPXXXPPPP 793
PP PPP P PPPP
Sbjct: 2 PPPPPPPPPPPPPPPP 17
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Frame = +2
Query: 659 APPPGQPXXXRGXIXXXXNPXGXXXXXXXPPXX---PPPXPXXXPPPP 793
+PPP P + +P PP PPP P PPPP
Sbjct: 236 SPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 283
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Frame = +2
Query: 659 APPPGQPXXXRGXIXXXXNPXGXXXXXXXPPXX---PPPXPXXXPPPP 793
+PPP P + +P PP PPP P PPPP
Sbjct: 257 SPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 304
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Frame = +2
Query: 659 APPPGQPXXXRGXIXXXXNPXGXXXXXXXPPXX---PPPXPXXXPPPP 793
+PPP P + +P PP PPP P PPPP
Sbjct: 242 SPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 289
>AC024838-7|AAF60820.1| 381|Caenorhabditis elegans Hypothetical
protein Y59E9AL.2 protein.
Length = 381
Score = 29.1 bits (62), Expect = 4.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 749 PXXPPPXPXXXPPPPR 796
P PPP P PPPPR
Sbjct: 184 PPPPPPIPPPGPPPPR 199
>AC024838-3|AAF60821.1| 381|Caenorhabditis elegans Hypothetical
protein Y59E9AL.3 protein.
Length = 381
Score = 29.1 bits (62), Expect = 4.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 749 PXXPPPXPXXXPPPPR 796
P PPP P PPPPR
Sbjct: 184 PPPPPPIPPPGPPPPR 199
>U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical
protein T19A5.3a protein.
Length = 715
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 792 GGGGXXXGXGGGFXGG 745
GGGG G GGGF GG
Sbjct: 484 GGGGGFGGGGGGFGGG 499
>L25598-5|AAM15550.1| 113|Caenorhabditis elegans Calpain family
protein 1, isoform c protein.
Length = 113
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 792 GGGGXXXGXGGGFXGG 745
GGGG G GGGF GG
Sbjct: 54 GGGGGGGGGGGGFGGG 69
>L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family
protein 1, isoform b protein.
Length = 737
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 792 GGGGXXXGXGGGFXGG 745
GGGG G GGGF GG
Sbjct: 54 GGGGGGGGGGGGFGGG 69
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 792 GGGGXXXGXGGGFXGG 745
GGGG G GGGF GG
Sbjct: 54 GGGGGGGGGGGGFGGG 69
>L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family
protein 1, isoform a protein.
Length = 780
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 792 GGGGXXXGXGGGFXGG 745
GGGG G GGGF GG
Sbjct: 54 GGGGGGGGGGGGFGGG 69
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,000,634
Number of Sequences: 27780
Number of extensions: 139935
Number of successful extensions: 1540
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -