Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_J19
(864 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0105 + 25607374-25607673,25608319-25608377,25608761-256089... 31 1.6
08_02_1322 + 26131395-26131599,26132382-26132468,26133119-261333... 29 4.8
09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,961... 29 6.3
09_04_0193 - 15492102-15492746,15492833-15492946,15493042-154933... 28 8.4
09_02_0374 - 8112021-8112820,8112908-8113152,8113256-8113455,811... 28 8.4
08_01_0945 + 9376997-9377818,9378065-9378373,9379510-9379800,938... 28 8.4
07_01_0184 - 1304328-1304951,1305328-1305441,1305549-1305839,130... 28 8.4
05_06_0038 - 25100851-25101474,25101945-25102058,25102151-251024... 28 8.4
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196... 28 8.4
01_06_0835 - 32312264-32312884,32313529-32313642,32313739-323140... 28 8.4
>05_06_0105 +
25607374-25607673,25608319-25608377,25608761-25608917,
25609157-25609461,25609866-25609986,25610334-25610422,
25610491-25610569
Length = 369
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 379 LMEASIHHKGXNMLGRSCVDSRTRVP--PVSLPLVCTGNGVRGERCRISEREANIRCIQE 552
L A++ H + L RS V SR V P LVC+G G G R+ +R A R I
Sbjct: 25 LRSAAVLHGNQSSLARSLV-SRLAVSTDPAIDALVCSGRGSAGGSARLFQRHAARRRIST 83
Query: 553 IQ 558
Q
Sbjct: 84 FQ 85
>08_02_1322 +
26131395-26131599,26132382-26132468,26133119-26133372,
26133430-26133526,26133613-26133693,26133782-26133976,
26134093-26134182,26134296-26134471,26134565-26134687,
26134799-26134945,26135027-26135163,26135247-26135364,
26135462-26135518
Length = 588
Score = 29.1 bits (62), Expect = 4.8
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +2
Query: 497 EEKGVELVKEKRILDAFRRFSKALKMVVXXXXXXXXXXXXXKAVAITDLKVKLYNNLAHC 676
+E+G L K + + A +R+ KA K + K LKV N A C
Sbjct: 415 KEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEKKQSK-----QLKVTCNLNNAAC 469
Query: 677 QLQYNEYEAALDLCXRAXNM-TQKM*RLY 760
+L+ +Y+ A LC + + +Q + LY
Sbjct: 470 KLKLKDYKQAEKLCTKVLELDSQNVKALY 498
>09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,
9614416-9614501,9615519-9615678,9616122-9617438,
9619463-9620428,9621452-9621766
Length = 1199
Score = 28.7 bits (61), Expect = 6.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 285 HPYTPCSLHKFXRCTSAAG 229
HP PC+L K+ CT+ G
Sbjct: 1079 HPLDPCTLEKYDSCTNGTG 1097
>09_04_0193 -
15492102-15492746,15492833-15492946,15493042-15493332,
15493412-15493720,15493815-15494552
Length = 698
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1
Query: 480 AYQGQ*HRWHSGP 442
AY+ Q HRWHSGP
Sbjct: 457 AYRKQQHRWHSGP 469
>09_02_0374 -
8112021-8112820,8112908-8113152,8113256-8113455,
8113584-8114235,8114369-8114661
Length = 729
Score = 28.3 bits (60), Expect = 8.4
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 431 VWTPGPECHLCHCPW 475
VW PG E LC C W
Sbjct: 582 VWNPGSEFSLCDCSW 596
>08_01_0945 +
9376997-9377818,9378065-9378373,9379510-9379800,
9380060-9380173,9380280-9380981
Length = 745
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1
Query: 480 AYQGQ*HRWHSGP 442
AY+ Q HRWHSGP
Sbjct: 485 AYRKQQHRWHSGP 497
>07_01_0184 -
1304328-1304951,1305328-1305441,1305549-1305839,
1305930-1306238,1306326-1307048
Length = 686
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1
Query: 480 AYQGQ*HRWHSGP 442
AY+ Q HRWHSGP
Sbjct: 452 AYRKQQHRWHSGP 464
>05_06_0038 -
25100851-25101474,25101945-25102058,25102151-25102441,
25102552-25102860,25103458-25104186
Length = 688
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1
Query: 480 AYQGQ*HRWHSGP 442
AY+ Q HRWHSGP
Sbjct: 454 AYRKQQHRWHSGP 466
>03_06_0109 -
31717691-31718311,31719110-31719223,31719316-31719606,
31719698-31720006,31720098-31720865
Length = 700
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1
Query: 480 AYQGQ*HRWHSGP 442
AY+ Q HRWHSGP
Sbjct: 467 AYRKQQHRWHSGP 479
>01_06_0835 -
32312264-32312884,32313529-32313642,32313739-32314029,
32314135-32314443,32315194-32315931
Length = 690
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1
Query: 480 AYQGQ*HRWHSGP 442
AY+ Q HRWHSGP
Sbjct: 457 AYRKQQHRWHSGP 469
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,355,718
Number of Sequences: 37544
Number of extensions: 291461
Number of successful extensions: 630
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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