Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_J18
         (901 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769...    33   0.31 
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247     31   1.2  
01_06_1539 + 38107108-38109649,38110563-38110915                       28   8.8  

>06_02_0032 +
           10775031-10775520,10775661-10776246,10776333-10776973,
           10777270-10777973
          Length = 806

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 233 WIKNIVIMSIGLTCFGLALGYIAYMRQKYESMGYYSAI 346
           W+  ++ ++I L   GL L Y+A  R + ES GY+ A+
Sbjct: 748 WLFKVMNITIVLNLLGLLLAYMAGSRMRLESSGYFIAL 785


>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
          Length = 974

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 233  WIKNIVIMSIGLTCFGLALGYIAYMRQKYESMGYY 337
            W  N++ ++I L   GL L Y+A  R + +S GY+
Sbjct: 905  WSLNVMNITIVLDLLGLLLAYMAGSRMRLQSSGYF 939


>01_06_1539 + 38107108-38109649,38110563-38110915
          Length = 964

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 197 NTN*EKQFIILLWIKNIVIMSIGLTCFGLALGYIAYMRQKYESMG-YYSAIDKDGKEIFE 373
           N +  + F++L+ + ++V++  GL C    L Y  Y  +++ S G   S  D D K + E
Sbjct: 609 NFSQRRLFVVLIIVTSLVVLLSGLAC----LRYENYKLEQFHSKGDIESGDDSDSKWVLE 664


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,657,343
Number of Sequences: 37544
Number of extensions: 280056
Number of successful extensions: 649
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)