Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_J18
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   2.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   8.8  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 230 LWIKNIVIMSIGLTCFGLALGYIAYMRQKYES 325
           +W+  + ++S G TC+ L LG+   + Q  +S
Sbjct: 353 MWLTMLSMIS-GATCYALFLGHATNLIQSLDS 383


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 230 LWIKNIVIMSIGLTCFGLALGYIAYMRQKYES 325
           +W+  + ++S G TC+ L LG+   + Q  +S
Sbjct: 321 MWLTMLSMIS-GATCYALFLGHATNLIQSLDS 351


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 748  QKXPPTPPPXP 716
            Q+ PP PPP P
Sbjct: 1352 QQQPPPPPPPP 1362


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
 Frame = -3

Query: 185 IYYMTAFHCYGE-A*NNVYVQILSSLPSSL-----DYNIKYI*VVVLEWV 54
           I+Y T+   YG  A N   + I   L   +     DY I  I +VV+ WV
Sbjct: 202 IFYTTSQQYYGHFAGNFSSISITFKLAREMGFFMMDYYIPSILIVVISWV 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,454
Number of Sequences: 438
Number of extensions: 3488
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)