Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_J14
(868 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex sub... 104 2e-23
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni... 52 8e-08
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz... 45 2e-05
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun... 43 5e-05
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c... 29 1.1
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 28 1.5
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 4.6
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 26 6.0
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 26 8.0
>SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex
subunit Rpc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 104 bits (249), Expect = 2e-23
Identities = 52/110 (47%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Frame = +2
Query: 236 MLFCPTCANMLMVEEGPEAALRYACNTCPYVYNIKKKVSSRTFPKLKELDYIMGGAAAWE 415
M FCPTC N L+V E + C TCPY + I + SR KE+D ++GG A+E
Sbjct: 1 MQFCPTCGNHLIVAVDEEGRNAFDCRTCPYHFPISTFLYSRHEFAQKEVDDVLGGEEAFE 60
Query: 416 NVDSTDAVC--PKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 559
+ T+ C KC RAYF QLQ RSADEPM+TFYRC KC WR+
Sbjct: 61 SNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRCT--KCKFQWRE 108
>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 119
Score = 52.4 bits (120), Expect = 8e-08
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Frame = +2
Query: 236 MLFCPTCANMLMVEEGPEAALRYACNTCPYVYN--------IKKKVSSRTFPKLKELDY- 388
++FC C N+L E A C+ C VY ++ K S+ FP +L +
Sbjct: 7 LIFCSECGNLL---ESTTAQWT-TCDQCQSVYPSEQFANLVVETKSSASAFPSALKLKHS 62
Query: 389 IMGGAAAWENVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRC--CNHKCAHN 550
I+ + E + + CPKCG F LQ RSADE T FY C C +K + N
Sbjct: 63 IVQVESQKEEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFSTN 118
>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 44.8 bits (101), Expect = 2e-05
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + + Q+QTRSADEPMTTF C C + W+
Sbjct: 255 CGKCKQKKVSYYQMQTRSADEPMTTFCECT--VCGNRWK 291
>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 113
Score = 43.2 bits (97), Expect = 5e-05
Identities = 29/102 (28%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
Frame = +2
Query: 230 SXMLFCPTCANMLMVEEGP-EAALRYACNTCPY--VYNIKKKVSSRTFPKLKELDYIMGG 400
S +C C NML E + LR AC C Y + K E +
Sbjct: 2 SNFQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHD 61
Query: 401 AAAWENVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRC 526
A+ + +D CP+C A F Q +R D MT Y C
Sbjct: 62 ASTDPTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVC 103
>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 408
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 738 IAVPTDTIYGLACSANCPQAIKKLY 812
+A PT+T+YGL A +A+ +Y
Sbjct: 56 VAFPTETVYGLGADARRTEAVLSIY 80
>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 28.3 bits (60), Expect = 1.5
Identities = 8/31 (25%), Positives = 20/31 (64%)
Frame = +1
Query: 118 DSFSGALIQTTYLKKFMIILFCSISYLHKFN 210
++F+G ++ +Y KFM++ ++++ FN
Sbjct: 294 ENFNGQAVKLSYTHKFMLVFLSMVAFISYFN 324
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 325 CLQYQEESFISNIP*IKGIRLYYGRSC 405
C Y S +SN P I I +Y R C
Sbjct: 26 CYMYDTVSLVSNAPNIYSIPFFYDRIC 52
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 6.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 129 WSLDSNYLFKKVYDNTILFY 188
WS+DSN+L DN++ Y
Sbjct: 136 WSVDSNFLIAGAMDNSLRLY 155
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 8.0
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +2
Query: 299 RYACNTCPYVYNIKKKVSSRTFPKLKELDYIMGGAAAWENVDSTDAVCPKCG 454
R++C C VY + + + + I+ G A E+ DA CP CG
Sbjct: 340 RFSC--CDRVYPCDECHDADQNHTFEHANRIICGYCAMESFYKKDATCPHCG 389
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,402
Number of Sequences: 5004
Number of extensions: 54659
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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