Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_J14
(868 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ431198-2|ABD95903.1| 108|Homo sapiens DNA-directed RNA polyme... 177 3e-44
BC011932-1|AAH11932.1| 108|Homo sapiens polymerase (RNA) III (D... 177 3e-44
AF126531-1|AAD31424.1| 108|Homo sapiens putative DNA-directed R... 177 3e-44
AF060223-1|AAG43123.1| 108|Homo sapiens My010 protein protein. 177 3e-44
AF051316-1|AAF18268.1| 108|Homo sapiens RNA polymerase III subu... 177 3e-44
Z69719-2|CAI95605.1| 108|Homo sapiens polymerase (RNA) III (DNA... 176 7e-44
AE006462-2|AAK61210.1| 108|Homo sapiens RNA polymerase III subu... 176 7e-44
Z23102-1|CAA80649.1| 125|Homo sapiens RNA Polymerase II subunit... 58 4e-08
BC067794-1|AAH67794.1| 125|Homo sapiens polymerase (RNA) II (DN... 58 4e-08
BC017112-1|AAH17112.1| 125|Homo sapiens polymerase (RNA) II (DN... 58 4e-08
AD001527-2|AAB51181.1| 125|Homo sapiens HUMAN DNA-DIRECTED RNA ... 58 4e-08
BC080186-1|AAH80186.2| 279|Homo sapiens yrdC domain containing ... 48 6e-05
BC068057-1|AAH68057.1| 270|Homo sapiens YRDC protein protein. 48 6e-05
BC067857-1|AAH67857.2| 278|Homo sapiens YRDC protein protein. 48 6e-05
BC008984-1|AAH08984.3| 292|Homo sapiens YRDC protein protein. 48 6e-05
AY286020-1|AAP37054.1| 270|Homo sapiens ischemia/reperfusion in... 48 6e-05
AY286019-1|AAP37053.1| 270|Homo sapiens ischemia/reperfusion in... 48 6e-05
AY172561-1|AAO41711.1| 279|Homo sapiens YRDC protein protein. 48 6e-05
AL929472-8|CAH70083.1| 279|Homo sapiens ischemia/reperfusion in... 48 6e-05
AF250397-1|AAQ14263.1| 223|Homo sapiens dopamine receptor inter... 48 6e-05
BC041613-1|AAH41613.1| 348|Homo sapiens transcription elongatio... 45 4e-04
AL357134-3|CAI22178.1| 348|Homo sapiens transcription elongatio... 45 4e-04
AL109936-2|CAI19025.1| 348|Homo sapiens transcription elongatio... 45 4e-04
AJ223473-1|CAA11393.1| 320|Homo sapiens transcription elongatio... 45 4e-04
X62585-1|CAA44470.1| 301|Homo sapiens transcription elongation ... 44 5e-04
X57198-1|CAA40484.1| 280|Homo sapiens transcription elongation ... 44 5e-04
M81601-1|AAA61138.1| 301|Homo sapiens transcription elongation ... 44 5e-04
CR542221-1|CAG47017.1| 301|Homo sapiens TCEA1 protein. 44 5e-04
BT019995-1|AAV38798.1| 301|Homo sapiens transcription elongatio... 44 5e-04
BC072460-1|AAH72460.1| 301|Homo sapiens transcription elongatio... 44 5e-04
D50495-1|BAA09089.1| 299|Homo sapiens transcription elongation ... 43 0.001
CR456940-1|CAG33221.1| 299|Homo sapiens TCEA2 protein. 43 0.001
BC018896-1|AAH18896.1| 299|Homo sapiens transcription elongatio... 43 0.001
AL590548-5|CAD11901.1| 272|Homo sapiens transcription elongatio... 43 0.001
AL590548-4|CAD11900.1| 270|Homo sapiens transcription elongatio... 43 0.001
AL590548-1|CAI13198.1| 299|Homo sapiens transcription elongatio... 43 0.001
X73534-1|CAA51940.1| 301|Homo sapiens transcription elongation ... 43 0.002
CR457109-1|CAG33390.1| 126|Homo sapiens ZNRD1 protein. 41 0.007
BX088647-3|CAI95579.1| 126|Homo sapiens zinc ribbon domain cont... 41 0.007
BC050608-1|AAH50608.1| 126|Homo sapiens zinc ribbon domain cont... 41 0.007
BC010898-1|AAH10898.1| 126|Homo sapiens zinc ribbon domain cont... 41 0.007
AL845439-2|CAI18538.1| 126|Homo sapiens zinc ribbon domain cont... 41 0.007
AL671859-2|CAI17577.1| 126|Homo sapiens zinc ribbon domain cont... 41 0.007
AL669914-2|CAI18176.1| 126|Homo sapiens zinc ribbon domain cont... 41 0.007
AF230338-1|AAG50160.1| 126|Homo sapiens nuclear RNA polymerase ... 41 0.007
AF230337-1|AAG50159.1| 126|Homo sapiens nuclear RNA polymerase ... 41 0.007
AF024617-1|AAF40469.1| 126|Homo sapiens transcription-associate... 41 0.007
AB202082-1|BAE78600.1| 126|Homo sapiens zinc ribbon domain cont... 41 0.007
>DQ431198-2|ABD95903.1| 108|Homo sapiens DNA-directed RNA
polymerases III 12.5 kDa polypeptide protein.
Length = 108
Score = 177 bits (432), Expect = 3e-44
Identities = 75/108 (69%), Positives = 90/108 (83%)
Frame = +2
Query: 236 MLFCPTCANMLMVEEGPEAALRYACNTCPYVYNIKKKVSSRTFPKLKELDYIMGGAAAWE 415
+LFCP C N L+VEEG + R+ACNTCPYV+NI +KV++R +PKLKE+D ++GGAAAWE
Sbjct: 2 LLFCPGCGNGLIVEEG-QRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWE 60
Query: 416 NVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 559
NVDST CPKC + RAYFMQLQTRSADEPMTTFY+CCN +C H WRD
Sbjct: 61 NVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>BC011932-1|AAH11932.1| 108|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide K, 12.3 kDa protein.
Length = 108
Score = 177 bits (432), Expect = 3e-44
Identities = 75/108 (69%), Positives = 90/108 (83%)
Frame = +2
Query: 236 MLFCPTCANMLMVEEGPEAALRYACNTCPYVYNIKKKVSSRTFPKLKELDYIMGGAAAWE 415
+LFCP C N L+VEEG + R+ACNTCPYV+NI +KV++R +PKLKE+D ++GGAAAWE
Sbjct: 2 LLFCPGCGNGLIVEEG-QRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWE 60
Query: 416 NVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 559
NVDST CPKC + RAYFMQLQTRSADEPMTTFY+CCN +C H WRD
Sbjct: 61 NVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>AF126531-1|AAD31424.1| 108|Homo sapiens putative DNA-directed RNA
polymerase III C11 subunit protein.
Length = 108
Score = 177 bits (432), Expect = 3e-44
Identities = 75/108 (69%), Positives = 90/108 (83%)
Frame = +2
Query: 236 MLFCPTCANMLMVEEGPEAALRYACNTCPYVYNIKKKVSSRTFPKLKELDYIMGGAAAWE 415
+LFCP C N L+VEEG + R+ACNTCPYV+NI +KV++R +PKLKE+D ++GGAAAWE
Sbjct: 2 LLFCPGCGNGLIVEEG-QRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWE 60
Query: 416 NVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 559
NVDST CPKC + RAYFMQLQTRSADEPMTTFY+CCN +C H WRD
Sbjct: 61 NVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>AF060223-1|AAG43123.1| 108|Homo sapiens My010 protein protein.
Length = 108
Score = 177 bits (432), Expect = 3e-44
Identities = 75/108 (69%), Positives = 90/108 (83%)
Frame = +2
Query: 236 MLFCPTCANMLMVEEGPEAALRYACNTCPYVYNIKKKVSSRTFPKLKELDYIMGGAAAWE 415
+LFCP C N L+VEEG + R+ACNTCPYV+NI +KV++R +PKLKE+D ++GGAAAWE
Sbjct: 2 LLFCPGCGNGLIVEEG-QRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWE 60
Query: 416 NVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 559
NVDST CPKC + RAYFMQLQTRSADEPMTTFY+CCN +C H WRD
Sbjct: 61 NVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>AF051316-1|AAF18268.1| 108|Homo sapiens RNA polymerase III subunit
protein.
Length = 108
Score = 177 bits (432), Expect = 3e-44
Identities = 75/108 (69%), Positives = 90/108 (83%)
Frame = +2
Query: 236 MLFCPTCANMLMVEEGPEAALRYACNTCPYVYNIKKKVSSRTFPKLKELDYIMGGAAAWE 415
+LFCP C N L+VEEG + R+ACNTCPYV+NI +KV++R +PKLKE+D ++GGAAAWE
Sbjct: 2 LLFCPGCGNGLIVEEG-QRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWE 60
Query: 416 NVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 559
NVDST CPKC + RAYFMQLQTRSADEPMTTFY+CCN +C H WRD
Sbjct: 61 NVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>Z69719-2|CAI95605.1| 108|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide K, 12.3 kDa protein.
Length = 108
Score = 176 bits (429), Expect = 7e-44
Identities = 74/108 (68%), Positives = 90/108 (83%)
Frame = +2
Query: 236 MLFCPTCANMLMVEEGPEAALRYACNTCPYVYNIKKKVSSRTFPKLKELDYIMGGAAAWE 415
+LFCP C N L+VEEG + R++CNTCPYV+NI +KV++R +PKLKE+D ++GGAAAWE
Sbjct: 2 LLFCPGCGNGLIVEEG-QRCHRFSCNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWE 60
Query: 416 NVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 559
NVDST CPKC + RAYFMQLQTRSADEPMTTFY+CCN +C H WRD
Sbjct: 61 NVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>AE006462-2|AAK61210.1| 108|Homo sapiens RNA polymerase III subunit
CII protein.
Length = 108
Score = 176 bits (429), Expect = 7e-44
Identities = 74/108 (68%), Positives = 90/108 (83%)
Frame = +2
Query: 236 MLFCPTCANMLMVEEGPEAALRYACNTCPYVYNIKKKVSSRTFPKLKELDYIMGGAAAWE 415
+LFCP C N L+VEEG + R++CNTCPYV+NI +KV++R +PKLKE+D ++GGAAAWE
Sbjct: 2 LLFCPGCGNGLIVEEG-QRCHRFSCNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWE 60
Query: 416 NVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 559
NVDST CPKC + RAYFMQLQTRSADEPMTTFY+CCN +C H WRD
Sbjct: 61 NVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>Z23102-1|CAA80649.1| 125|Homo sapiens RNA Polymerase II subunit
14.5 kD protein.
Length = 125
Score = 58.0 bits (134), Expect = 4e-08
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Frame = +2
Query: 227 FSXMLFCPTCANMLMVEEGPE-AALRYACNTCPYVYNIKKKVS--SRTFPKLKELDYIMG 397
F + FC C NML +E E L YAC C Y ++ ++ EL I+
Sbjct: 11 FVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIA 70
Query: 398 GAAAWENVDST-DAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 559
+ + T D C KCG+ A F Q + A++ M +Y C C H W +
Sbjct: 71 DVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>BC067794-1|AAH67794.1| 125|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide I, 14.5kDa protein.
Length = 125
Score = 58.0 bits (134), Expect = 4e-08
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Frame = +2
Query: 227 FSXMLFCPTCANMLMVEEGPE-AALRYACNTCPYVYNIKKKVS--SRTFPKLKELDYIMG 397
F + FC C NML +E E L YAC C Y ++ ++ EL I+
Sbjct: 11 FVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIA 70
Query: 398 GAAAWENVDST-DAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 559
+ + T D C KCG+ A F Q + A++ M +Y C C H W +
Sbjct: 71 DVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>BC017112-1|AAH17112.1| 125|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide I, 14.5kDa protein.
Length = 125
Score = 58.0 bits (134), Expect = 4e-08
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Frame = +2
Query: 227 FSXMLFCPTCANMLMVEEGPE-AALRYACNTCPYVYNIKKKVS--SRTFPKLKELDYIMG 397
F + FC C NML +E E L YAC C Y ++ ++ EL I+
Sbjct: 11 FVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIA 70
Query: 398 GAAAWENVDST-DAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 559
+ + T D C KCG+ A F Q + A++ M +Y C C H W +
Sbjct: 71 DVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>AD001527-2|AAB51181.1| 125|Homo sapiens HUMAN DNA-DIRECTED RNA
POLYMERASE II 14.5 KD SUBUNIT protein.
Length = 125
Score = 58.0 bits (134), Expect = 4e-08
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Frame = +2
Query: 227 FSXMLFCPTCANMLMVEEGPE-AALRYACNTCPYVYNIKKKVS--SRTFPKLKELDYIMG 397
F + FC C NML +E E L YAC C Y ++ ++ EL I+
Sbjct: 11 FVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIA 70
Query: 398 GAAAWENVDST-DAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 559
+ + T D C KCG+ A F Q + A++ M +Y C C H W +
Sbjct: 71 DVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>BC080186-1|AAH80186.2| 279|Homo sapiens yrdC domain containing (E.
coli) protein.
Length = 279
Score = 47.6 bits (108), Expect = 6e-05
Identities = 18/35 (51%), Positives = 27/35 (77%)
Frame = +3
Query: 729 GQVIAVPTDTIYGLACSANCPQAIKKLYCIXGEXQ 833
G V+AVPTDT+YGLAC+A+C A++ +Y + G +
Sbjct: 80 GAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSE 114
>BC068057-1|AAH68057.1| 270|Homo sapiens YRDC protein protein.
Length = 270
Score = 47.6 bits (108), Expect = 6e-05
Identities = 18/35 (51%), Positives = 27/35 (77%)
Frame = +3
Query: 729 GQVIAVPTDTIYGLACSANCPQAIKKLYCIXGEXQ 833
G V+AVPTDT+YGLAC+A+C A++ +Y + G +
Sbjct: 71 GAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSE 105
>BC067857-1|AAH67857.2| 278|Homo sapiens YRDC protein protein.
Length = 278
Score = 47.6 bits (108), Expect = 6e-05
Identities = 18/35 (51%), Positives = 27/35 (77%)
Frame = +3
Query: 729 GQVIAVPTDTIYGLACSANCPQAIKKLYCIXGEXQ 833
G V+AVPTDT+YGLAC+A+C A++ +Y + G +
Sbjct: 79 GAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSE 113
>BC008984-1|AAH08984.3| 292|Homo sapiens YRDC protein protein.
Length = 292
Score = 47.6 bits (108), Expect = 6e-05
Identities = 18/35 (51%), Positives = 27/35 (77%)
Frame = +3
Query: 729 GQVIAVPTDTIYGLACSANCPQAIKKLYCIXGEXQ 833
G V+AVPTDT+YGLAC+A+C A++ +Y + G +
Sbjct: 93 GAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSE 127
>AY286020-1|AAP37054.1| 270|Homo sapiens ischemia/reperfusion
inducible protein transcript variant 2 protein.
Length = 270
Score = 47.6 bits (108), Expect = 6e-05
Identities = 18/35 (51%), Positives = 27/35 (77%)
Frame = +3
Query: 729 GQVIAVPTDTIYGLACSANCPQAIKKLYCIXGEXQ 833
G V+AVPTDT+YGLAC+A+C A++ +Y + G +
Sbjct: 71 GAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSE 105
>AY286019-1|AAP37053.1| 270|Homo sapiens ischemia/reperfusion
inducible protein transcript variant 1 protein.
Length = 270
Score = 47.6 bits (108), Expect = 6e-05
Identities = 18/35 (51%), Positives = 27/35 (77%)
Frame = +3
Query: 729 GQVIAVPTDTIYGLACSANCPQAIKKLYCIXGEXQ 833
G V+AVPTDT+YGLAC+A+C A++ +Y + G +
Sbjct: 71 GAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSE 105
>AY172561-1|AAO41711.1| 279|Homo sapiens YRDC protein protein.
Length = 279
Score = 47.6 bits (108), Expect = 6e-05
Identities = 18/35 (51%), Positives = 27/35 (77%)
Frame = +3
Query: 729 GQVIAVPTDTIYGLACSANCPQAIKKLYCIXGEXQ 833
G V+AVPTDT+YGLAC+A+C A++ +Y + G +
Sbjct: 80 GAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSE 114
>AL929472-8|CAH70083.1| 279|Homo sapiens ischemia/reperfusion
inducible protein protein.
Length = 279
Score = 47.6 bits (108), Expect = 6e-05
Identities = 18/35 (51%), Positives = 27/35 (77%)
Frame = +3
Query: 729 GQVIAVPTDTIYGLACSANCPQAIKKLYCIXGEXQ 833
G V+AVPTDT+YGLAC+A+C A++ +Y + G +
Sbjct: 80 GAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSE 114
>AF250397-1|AAQ14263.1| 223|Homo sapiens dopamine receptor
interacting protein 3 protein.
Length = 223
Score = 47.6 bits (108), Expect = 6e-05
Identities = 18/35 (51%), Positives = 27/35 (77%)
Frame = +3
Query: 729 GQVIAVPTDTIYGLACSANCPQAIKKLYCIXGEXQ 833
G V+AVPTDT+YGLAC+A+C A++ +Y + G +
Sbjct: 24 GAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSE 58
>BC041613-1|AAH41613.1| 348|Homo sapiens transcription elongation
factor A (SII), 3 protein.
Length = 348
Score = 44.8 bits (101), Expect = 4e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + Q+QTRSADEPMTTF C ++C + W+
Sbjct: 310 CSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 346
>AL357134-3|CAI22178.1| 348|Homo sapiens transcription elongation
factor A (SII), 3 protein.
Length = 348
Score = 44.8 bits (101), Expect = 4e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + Q+QTRSADEPMTTF C ++C + W+
Sbjct: 310 CSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 346
>AL109936-2|CAI19025.1| 348|Homo sapiens transcription elongation
factor A (SII), 3 protein.
Length = 348
Score = 44.8 bits (101), Expect = 4e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + Q+QTRSADEPMTTF C ++C + W+
Sbjct: 310 CSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 346
>AJ223473-1|CAA11393.1| 320|Homo sapiens transcription elongation
factor TFIIS.h protein.
Length = 320
Score = 44.8 bits (101), Expect = 4e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + Q+QTRSADEPMTTF C ++C + W+
Sbjct: 282 CSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 318
>X62585-1|CAA44470.1| 301|Homo sapiens transcription elongation
factor protein.
Length = 301
Score = 44.4 bits (100), Expect = 5e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + Q+QTRSADEPMTTF C ++C + W+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 299
>X57198-1|CAA40484.1| 280|Homo sapiens transcription elongation
factor protein.
Length = 280
Score = 44.4 bits (100), Expect = 5e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + Q+QTRSADEPMTTF C ++C + W+
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 278
>M81601-1|AAA61138.1| 301|Homo sapiens transcription elongation
factor SII protein.
Length = 301
Score = 44.4 bits (100), Expect = 5e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + Q+QTRSADEPMTTF C ++C + W+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 299
>CR542221-1|CAG47017.1| 301|Homo sapiens TCEA1 protein.
Length = 301
Score = 44.4 bits (100), Expect = 5e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + Q+QTRSADEPMTTF C ++C + W+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 299
>BT019995-1|AAV38798.1| 301|Homo sapiens transcription elongation
factor A (SII), 1 protein.
Length = 301
Score = 44.4 bits (100), Expect = 5e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + Q+QTRSADEPMTTF C ++C + W+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 299
>BC072460-1|AAH72460.1| 301|Homo sapiens transcription elongation
factor A (SII), 1 protein.
Length = 301
Score = 44.4 bits (100), Expect = 5e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + Q+QTRSADEPMTTF C ++C + W+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 299
>D50495-1|BAA09089.1| 299|Homo sapiens transcription elongation
factor S-II, hS-II-T1 protein.
Length = 299
Score = 43.2 bits (97), Expect = 0.001
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + Q+QTRS+DEPMTTF C ++C + W+
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 297
>CR456940-1|CAG33221.1| 299|Homo sapiens TCEA2 protein.
Length = 299
Score = 43.2 bits (97), Expect = 0.001
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + Q+QTRS+DEPMTTF C ++C + W+
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 297
>BC018896-1|AAH18896.1| 299|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 299
Score = 43.2 bits (97), Expect = 0.001
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + Q+QTRS+DEPMTTF C ++C + W+
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 297
>AL590548-5|CAD11901.1| 272|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 272
Score = 43.2 bits (97), Expect = 0.001
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + Q+QTRS+DEPMTTF C ++C + W+
Sbjct: 234 CGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 270
>AL590548-4|CAD11900.1| 270|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 270
Score = 43.2 bits (97), Expect = 0.001
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + Q+QTRS+DEPMTTF C ++C + W+
Sbjct: 234 CGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 270
>AL590548-1|CAI13198.1| 299|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 299
Score = 43.2 bits (97), Expect = 0.001
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + Q+QTRS+DEPMTTF C ++C + W+
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 297
>X73534-1|CAA51940.1| 301|Homo sapiens transcription elongation
factor protein.
Length = 301
Score = 42.7 bits (96), Expect = 0.002
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + Q+QTRSADEP+TTF C ++C + W+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPVTTFVVC--NECGNRWK 299
>CR457109-1|CAG33390.1| 126|Homo sapiens ZNRD1 protein.
Length = 126
Score = 40.7 bits (91), Expect = 0.007
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +2
Query: 221 NFFSXMLFCPTCANMLMVEEGPEAALRYACNTCPYVYNIKKKV--SSRTFPKLKELDYIM 394
+F S + FC C ++L + + C V + + KV +S F +L +
Sbjct: 12 SFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMS 71
Query: 395 GGAAAWENVDSTDAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 538
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 72 VEEGPECQGPVVDRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
>BX088647-3|CAI95579.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 40.7 bits (91), Expect = 0.007
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +2
Query: 221 NFFSXMLFCPTCANMLMVEEGPEAALRYACNTCPYVYNIKKKV--SSRTFPKLKELDYIM 394
+F S + FC C ++L + + C V + + KV +S F +L +
Sbjct: 12 SFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMS 71
Query: 395 GGAAAWENVDSTDAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 538
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 72 VEEGPECQGPVVDRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
>BC050608-1|AAH50608.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 40.7 bits (91), Expect = 0.007
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +2
Query: 221 NFFSXMLFCPTCANMLMVEEGPEAALRYACNTCPYVYNIKKKV--SSRTFPKLKELDYIM 394
+F S + FC C ++L + + C V + + KV +S F +L +
Sbjct: 12 SFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMS 71
Query: 395 GGAAAWENVDSTDAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 538
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 72 VEEGPECQGPVVDRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
>BC010898-1|AAH10898.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 40.7 bits (91), Expect = 0.007
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +2
Query: 221 NFFSXMLFCPTCANMLMVEEGPEAALRYACNTCPYVYNIKKKV--SSRTFPKLKELDYIM 394
+F S + FC C ++L + + C V + + KV +S F +L +
Sbjct: 12 SFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMS 71
Query: 395 GGAAAWENVDSTDAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 538
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 72 VEEGPECQGPVVDRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
>AL845439-2|CAI18538.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 40.7 bits (91), Expect = 0.007
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +2
Query: 221 NFFSXMLFCPTCANMLMVEEGPEAALRYACNTCPYVYNIKKKV--SSRTFPKLKELDYIM 394
+F S + FC C ++L + + C V + + KV +S F +L +
Sbjct: 12 SFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMS 71
Query: 395 GGAAAWENVDSTDAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 538
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 72 VEEGPECQGPVVDRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
>AL671859-2|CAI17577.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 40.7 bits (91), Expect = 0.007
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +2
Query: 221 NFFSXMLFCPTCANMLMVEEGPEAALRYACNTCPYVYNIKKKV--SSRTFPKLKELDYIM 394
+F S + FC C ++L + + C V + + KV +S F +L +
Sbjct: 12 SFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMS 71
Query: 395 GGAAAWENVDSTDAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 538
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 72 VEEGPECQGPVVDRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
>AL669914-2|CAI18176.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 40.7 bits (91), Expect = 0.007
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +2
Query: 221 NFFSXMLFCPTCANMLMVEEGPEAALRYACNTCPYVYNIKKKV--SSRTFPKLKELDYIM 394
+F S + FC C ++L + + C V + + KV +S F +L +
Sbjct: 12 SFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMS 71
Query: 395 GGAAAWENVDSTDAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 538
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 72 VEEGPECQGPVVDRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
>AF230338-1|AAG50160.1| 126|Homo sapiens nuclear RNA polymerase I
small specific subunit Rpa12 protein.
Length = 126
Score = 40.7 bits (91), Expect = 0.007
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +2
Query: 221 NFFSXMLFCPTCANMLMVEEGPEAALRYACNTCPYVYNIKKKV--SSRTFPKLKELDYIM 394
+F S + FC C ++L + + C V + + KV +S F +L +
Sbjct: 12 SFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMS 71
Query: 395 GGAAAWENVDSTDAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 538
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 72 VEEGPECQGPVVDRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
>AF230337-1|AAG50159.1| 126|Homo sapiens nuclear RNA polymerase I
small specific subunit Rpa12 protein.
Length = 126
Score = 40.7 bits (91), Expect = 0.007
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +2
Query: 221 NFFSXMLFCPTCANMLMVEEGPEAALRYACNTCPYVYNIKKKV--SSRTFPKLKELDYIM 394
+F S + FC C ++L + + C V + + KV +S F +L +
Sbjct: 12 SFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMS 71
Query: 395 GGAAAWENVDSTDAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 538
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 72 VEEGPECQGPVVDRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
>AF024617-1|AAF40469.1| 126|Homo sapiens transcription-associated
zinc ribbon protein protein.
Length = 126
Score = 40.7 bits (91), Expect = 0.007
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +2
Query: 221 NFFSXMLFCPTCANMLMVEEGPEAALRYACNTCPYVYNIKKKV--SSRTFPKLKELDYIM 394
+F S + FC C ++L + + C V + + KV +S F +L +
Sbjct: 12 SFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMS 71
Query: 395 GGAAAWENVDSTDAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 538
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 72 VEEGPECQGPVVDRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
>AB202082-1|BAE78600.1| 126|Homo sapiens zinc ribbon domain
containing, 1 protein.
Length = 126
Score = 40.7 bits (91), Expect = 0.007
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +2
Query: 221 NFFSXMLFCPTCANMLMVEEGPEAALRYACNTCPYVYNIKKKV--SSRTFPKLKELDYIM 394
+F S + FC C ++L + + C V + + KV +S F +L +
Sbjct: 12 SFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMS 71
Query: 395 GGAAAWENVDSTDAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 538
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 72 VEEGPECQGPVVDRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,682,676
Number of Sequences: 237096
Number of extensions: 1819299
Number of successful extensions: 2878
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 2799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2867
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11095746082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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