Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_J14
(868 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-3053|AAM68394.2| 108|Drosophila melanogaster CG33785-P... 181 1e-45
AE014297-1835|AAF55045.1| 129|Drosophila melanogaster CG3284-PA... 73 4e-13
S88139-1|AAB21674.1| 129|Drosophila melanogaster RNA polymerase... 72 9e-13
S66940-1|AAB29028.2| 129|Drosophila melanogaster RNA polymerase... 70 4e-12
AY071501-1|AAL49123.1| 248|Drosophila melanogaster RE55868p pro... 49 7e-06
AE013599-3052|AAF57437.2| 248|Drosophila melanogaster CG33786-P... 49 7e-06
X53670-1|CAA37710.1| 313|Drosophila melanogaster protein ( Dros... 46 5e-05
L26091-1|AAA92864.2| 313|Drosophila melanogaster transcription ... 46 5e-05
AY051843-1|AAK93267.1| 313|Drosophila melanogaster LD34766p pro... 46 5e-05
AE014134-2559|AAF53436.1| 313|Drosophila melanogaster CG3710-PA... 46 5e-05
AE014297-3039|AAF55918.1| 120|Drosophila melanogaster CG13418-P... 44 2e-04
AY089685-1|AAL90423.1| 378|Drosophila melanogaster RH62264p pro... 29 8.3
AE013599-2969|AAF57504.1| 378|Drosophila melanogaster CG11099-P... 29 8.3
>AE013599-3053|AAM68394.2| 108|Drosophila melanogaster CG33785-PA,
isoform A protein.
Length = 108
Score = 181 bits (440), Expect = 1e-45
Identities = 70/108 (64%), Positives = 91/108 (84%)
Frame = +2
Query: 236 MLFCPTCANMLMVEEGPEAALRYACNTCPYVYNIKKKVSSRTFPKLKELDYIMGGAAAWE 415
+ FCP+C N+L++EE R+ CNTCPY+ I++K+S++TFP+LKE+D+++GG AAWE
Sbjct: 2 LFFCPSCGNILIIEEDTNCH-RFTCNTCPYISKIRRKISTKTFPRLKEVDHVLGGKAAWE 60
Query: 416 NVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 559
NVDSTDA CP CG+ RAYFMQ+QTRSADEPMTTFY+CCNH+C H WRD
Sbjct: 61 NVDSTDAECPTCGHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTWRD 108
>AE014297-1835|AAF55045.1| 129|Drosophila melanogaster CG3284-PA
protein.
Length = 129
Score = 73.3 bits (172), Expect = 4e-13
Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Frame = +2
Query: 227 FSXMLFCPTCANMLMVEEGPE-AALRYACNTCPYVYNIKKKVS--SRTFPKLKELDYIMG 397
F + FC C NML +E E L YAC C Y ++ ++ EL +I+
Sbjct: 15 FVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVP 74
Query: 398 GAAAWENVDST-DAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 559
+ + T D CPKC + A F Q QTR A+E M +Y C N C H W +
Sbjct: 75 DVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>S88139-1|AAB21674.1| 129|Drosophila melanogaster RNA polymerase II
15-kda subunit protein.
Length = 129
Score = 72.1 bits (169), Expect = 9e-13
Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Frame = +2
Query: 227 FSXMLFCPTCANMLMVEEGPE-AALRYACNTCPYVYNIKKKVS--SRTFPKLKELDYIMG 397
F + FC C NML +E E L YAC C Y ++ ++ EL +I+
Sbjct: 15 FVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQKTNSNCIYVNKIMHEIDELTHIVP 74
Query: 398 GAAAWENVDST-DAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 559
+ + T D CPKC + A F + QTR A+E M +Y C N C H W +
Sbjct: 75 DVISDPTLPRTEDHACPKCSHREAVFFKAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>S66940-1|AAB29028.2| 129|Drosophila melanogaster RNA polymerase II
subunit 9 protein.
Length = 129
Score = 70.1 bits (164), Expect = 4e-12
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Frame = +2
Query: 227 FSXMLFCPTCANMLMVEEGPE-AALRYACNTCPYVYNIKKKVS--SRTFPKLKELDYIMG 397
F + FC C NML +E E L YAC C Y ++ ++ EL +I+
Sbjct: 15 FVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVP 74
Query: 398 GAAAWENVDST-DAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 559
+ + T D CPKC + A Q QTR A+E M +Y C N C H W +
Sbjct: 75 DVISDPTLPRTEDHACPKCSHREAVSFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>AY071501-1|AAL49123.1| 248|Drosophila melanogaster RE55868p
protein.
Length = 248
Score = 49.2 bits (112), Expect = 7e-06
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +3
Query: 729 GQVIAVPTDTIYGLACSANCPQAIKKLYCIXGEXQ 833
GQVIA+PTDT+YGLAC AN AI++LY I G +
Sbjct: 51 GQVIALPTDTVYGLACDANNETAIQQLYEIKGRDE 85
>AE013599-3052|AAF57437.2| 248|Drosophila melanogaster CG33786-PA,
isoform A protein.
Length = 248
Score = 49.2 bits (112), Expect = 7e-06
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +3
Query: 729 GQVIAVPTDTIYGLACSANCPQAIKKLYCIXGEXQ 833
GQVIA+PTDT+YGLAC AN AI++LY I G +
Sbjct: 51 GQVIALPTDTVYGLACDANNETAIQQLYEIKGRDE 85
>X53670-1|CAA37710.1| 313|Drosophila melanogaster protein (
Drosophila gene forRNA polymerase II elongation factor
DmS-II. ).
Length = 313
Score = 46.4 bits (105), Expect = 5e-05
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + QLQTRSADEPMTTF C ++C + W+
Sbjct: 275 CAKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRWK 311
>L26091-1|AAA92864.2| 313|Drosophila melanogaster transcription
elongation factor protein.
Length = 313
Score = 46.4 bits (105), Expect = 5e-05
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + QLQTRSADEPMTTF C ++C + W+
Sbjct: 275 CAKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRWK 311
>AY051843-1|AAK93267.1| 313|Drosophila melanogaster LD34766p
protein.
Length = 313
Score = 46.4 bits (105), Expect = 5e-05
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + QLQTRSADEPMTTF C ++C + W+
Sbjct: 275 CAKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRWK 311
>AE014134-2559|AAF53436.1| 313|Drosophila melanogaster CG3710-PA
protein.
Length = 313
Score = 46.4 bits (105), Expect = 5e-05
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +2
Query: 440 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 556
C KC + QLQTRSADEPMTTF C ++C + W+
Sbjct: 275 CAKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRWK 311
>AE014297-3039|AAF55918.1| 120|Drosophila melanogaster CG13418-PA
protein.
Length = 120
Score = 44.4 bits (100), Expect = 2e-04
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Frame = +2
Query: 242 FCPTCANMLMVEEGPEAALRYACNT--CPYVYNIKKK---VSSRTFPKLKELDYIMGGAA 406
FCP+C ++L + + Y C P VY+ +K + T+ K + +
Sbjct: 10 FCPSCGSILPELQVKGNVICYNCKKEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTKRESE 69
Query: 407 AWENVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRC--CNHKCAHN 550
+ + + CPKC + + + LQ RSADE T F+ C C K + N
Sbjct: 70 SDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESEN 119
>AY089685-1|AAL90423.1| 378|Drosophila melanogaster RH62264p
protein.
Length = 378
Score = 29.1 bits (62), Expect = 8.3
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +2
Query: 428 TDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNW 553
T++ C +C Y YFM ++ R + C ++C W
Sbjct: 306 TNSTCSRCLYTSYYFMVVKRRGSTSKQLFTCNFCTNRCGLLW 347
>AE013599-2969|AAF57504.1| 378|Drosophila melanogaster CG11099-PA
protein.
Length = 378
Score = 29.1 bits (62), Expect = 8.3
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +2
Query: 428 TDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNW 553
T++ C +C Y YFM ++ R + C ++C W
Sbjct: 306 TNSTCSRCLYTSYYFMVVKRRGSTSKQLFTCNFCTNRCGLLW 347
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,069,847
Number of Sequences: 53049
Number of extensions: 571124
Number of successful extensions: 1162
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4188579408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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