Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_J14
         (868 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.6  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 399 PPII*SNSFNLGNVRDETFFLI 334
           PP + SNS N   +R E +F +
Sbjct: 240 PPFMLSNSLNFPQIRGEFYFFL 261


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 399 PPII*SNSFNLGNVRDETFFLI 334
           PP + SNS N   +R E +F +
Sbjct: 240 PPFMLSNSLNFPQIRGEFYFFL 261


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/32 (28%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 302 YACN-TCPYVYNIKKKVSSRTFPKLKELDYIM 394
           + CN +  ++  I  + S+R +P++ +LD +M
Sbjct: 682 FNCNCSMDWLPGINNQTSTREYPRIMDLDNVM 713


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 405 AAPPII*SNSFNLGNVRDETFFLIL*TYGHVLQAYLSAASGPSST 271
           AAP +       +  V  E  F  L T+   LQA L+ AS P+ST
Sbjct: 49  AAPNMPAEEGEGMAGVTGEEPFDTLDTFLRELQADLAEASQPTST 93


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 858 SDTYGPRFTASLXLYSKVF**PEDSWHC 775
           S TYG RFT +L     +   P DS +C
Sbjct: 148 SVTYGMRFTTTLACMMDLHYYPLDSQNC 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,973
Number of Sequences: 438
Number of extensions: 3587
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)