Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_J10
         (936 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.99 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.99
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = -2

Query: 677 PRXPPPPXXKXQXPPPXGXXPPXPPPXXPP 588
           P   P    +   P P    PP  PP  PP
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 10/20 (50%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
 Frame = -3

Query: 865 GGPPLPXXXPXGGXPP--PP 812
           G PP P   P  G PP  PP
Sbjct: 37  GSPPNPSQGPPPGGPPGAPP 56


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 636  PPXGXXTPPPPPP 598
            P  G   PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 615  PPPPPPXP 592
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 612  PPPPPXPP 589
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 618 TPPPPPPXPP 589
           TPP P P PP
Sbjct: 337 TPPKPAPPPP 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,873
Number of Sequences: 438
Number of extensions: 7429
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)