Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_J07
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|...    71   3e-13
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   2.6  
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    27   3.4  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    27   4.5  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    26   6.0  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    26   6.0  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   7.9  

>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 303

 Score = 70.5 bits (165), Expect = 3e-13
 Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 7/195 (3%)
 Frame = +2

Query: 209 YEAHQMYRTLYFRYLTQKKYPEXXXXXXXXXXXXXERDQQGSGADLAILFVEALTKSETK 388
           YE HQM RTL  R +  KK+ +             E +Q GS ADLAI  ++   K+   
Sbjct: 17  YEGHQMLRTLVNRQVKAKKHDDAVALLYSGAKTLFEIEQTGSAADLAIYMLDVYEKASYA 76

Query: 389 PNEEWVSKLAKLFELISSSVPERETFLTNSIKWSMDNNKKGDPLLHKKIAEVFWKEKKYT 568
            + +  ++   L  L  +    R+ ++   ++WS     +GD  +H  +A +F K K+  
Sbjct: 77  ASLDNKARALTLLGLFPAEEGARKQYVKRLLEWSKSAGPQGDKDVHFAVATMFVKWKEPA 136

Query: 569 AAHRHFLHSSDGS--AYANMLIELPTTKGLKSEIDLFIAQAVLQILCLRNVRMA---TET 733
           +A +HF+  ++ S  AY   +    T+    S  D F  + VL  L   N+  A    ET
Sbjct: 137 SAEKHFVLGNEKSARAYGETMYYWFTSDSSISP-DTFAGRPVLNYLLAENLISAWNSLET 195

Query: 734 FLR-YTETH-PKIKN 772
           F + +T+++ P ++N
Sbjct: 196 FTKHFTKSNAPDVEN 210


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
 Frame = +2

Query: 365  ALTKSETKPNEEWVSKLAKLFELIS---SSVPERETFLTNSIKWSMDNNKKGDPLLHKKI 535
            +L  SE K     VS L K    +S   S VPE E  +TN +       K  +    K+ 
Sbjct: 1220 SLASSENKDLSNKVSSLTKQVNELSPKASKVPELERKITNLMHEYSQLGKTFED--EKRK 1277

Query: 536  AEVFWKEKKYTAAHRHFLHSSDGSA--YANMLIELPTTKGLKSEIDL 670
            A +  ++ +   + +  L S       Y  +L E+ TT+ L+SE+ L
Sbjct: 1278 ALIASRDNEELRSLKSELESKRKLEVEYQKVLEEVKTTRSLRSEVTL 1324


>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 362 EALTKSETKPNEEWVSKLAKLFELISSSVPERET 463
           E +  SE  P E+W   + +L+E++ S +  ++T
Sbjct: 42  ECIPPSEDSPLEDWEQPVQRLYEVLVSEIMLQQT 75


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 488 SMDNNKKGDPLLH-KKIAEVFWKEKKYTAAHRHFLHSSDGSAYANMLIELPTTKGLKSEI 664
           S+D N+K    +H  ++  V +  K +  A + + H+ DG +       L + K ++S  
Sbjct: 129 SIDRNRKYTEEIHIPQVYSVLFPSKYFGIAKQFWQHTGDGISSRRAAAFLHSYKKIQSIS 188

Query: 665 DLFIAQ 682
           +  +AQ
Sbjct: 189 EFLVAQ 194


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 528 LCRSGSPFLLLSIDHFIEFVRKVSRSGTLEL 436
           L RS  P+LL+S+D   +F++    SGTL L
Sbjct: 23  LLRSLKPYLLISVDD-DQFIKTNVASGTLRL 52


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 552 RKKSTQLLIDTFYTHRMVQHMLTCL*SY 635
           R++ + LL DTFYT+  V H L  +  Y
Sbjct: 227 RRRQSILLHDTFYTYEEVYHDLQIVRGY 254


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = +2

Query: 389  PNEEWVSKLAKLFELISSSVPERETFLTNSIK--WSMDNN--KKGD-PLLHKKIAEVFWK 553
            PN+    +L + F  +  S P  +TF++  +K  +S D+N  ++GD     KK+ EV   
Sbjct: 986  PNDSKNKELNRHFLKVDDSAPLDDTFMSKKVKLDFSSDSNVSERGDYDDNAKKVDEVISI 1045

Query: 554  EK 559
            EK
Sbjct: 1046 EK 1047


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,533,909
Number of Sequences: 5004
Number of extensions: 76133
Number of successful extensions: 217
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)