Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_J07
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0449 + 3335408-3335479,3336310-3336389,3336911-3336989,333...    61   1e-09
07_03_0504 - 18842442-18844668,18845418-18845428                       30   2.7  
01_06_0841 + 32361510-32362178,32362719-32363469,32363671-323638...    30   2.7  
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912     30   2.7  
04_04_1386 - 33166470-33166705,33166811-33167087,33167240-331675...    29   4.7  
01_03_0281 - 14570635-14574633                                         28   8.3  

>01_01_0449 +
           3335408-3335479,3336310-3336389,3336911-3336989,
           3337342-3337423,3337820-3337976,3338660-3338717,
           3338718-3338828,3339211-3339257,3339820-3339948,
           3340750-3340834,3341264-3341344,3341881-3341886
          Length = 328

 Score = 61.3 bits (142), Expect = 1e-09
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
 Frame = +2

Query: 164 RVLDKLEASINSGQYYEAHQMYRTLYFRYLTQKKYPEXXXXXXXXXXXXXERDQQGSGAD 343
           + ++KLE  +  G YYEA QMY++   RY+  +KY E             +  Q   G +
Sbjct: 24  QTIEKLENMVAEGNYYEAQQMYKSTGARYIAAQKYLEALDILQSGALVQLKHGQVTCGGE 83

Query: 344 LAILFVEALTKSETKPNEEWVSKLAKLFELISS-SVP 451
           LAI+FV+ L K+    NEE   ++ K+++     SVP
Sbjct: 84  LAIMFVDTLVKAALPYNEETFDRIRKMYDAFPRISVP 120


>07_03_0504 - 18842442-18844668,18845418-18845428
          Length = 745

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/40 (42%), Positives = 26/40 (65%)
 Frame = +2

Query: 320 DQQGSGADLAILFVEALTKSETKPNEEWVSKLAKLFELIS 439
           DQ  +G  LA+  +  LT  ETK  +E+++KLAKL  L++
Sbjct: 622 DQLNNG--LALPNLTMLTLKETKVTQEFINKLAKLPSLVT 659


>01_06_0841 +
           32361510-32362178,32362719-32363469,32363671-32363865,
           32364353-32364612
          Length = 624

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = -3

Query: 497 YPLTILLNLLERFLALGHWS*LIQIILPISRPILH*VWFPILLKLLRRVLRDQL-HYLVD 321
           + +T L++L +R L       L++ +LPI +   H    P+L K +RR+ R  L +  +D
Sbjct: 213 FKITELISLFQRRLLNFVDKTLVEDVLPILQVAFHSELTPVLEKCIRRIARSNLDNVSLD 272

Query: 320 R-VPKEV 303
           + +P EV
Sbjct: 273 KELPPEV 279


>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
          Length = 853

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 569 AAHRHFLHSSDGSAYANMLIELPTTKGLKSEID--LFIAQAVLQIL-CLRNVRMATETFL 739
           AA R F    DG++Y   LI+ P      SE+   L I    L ++ C+  V + TET L
Sbjct: 84  AALRSFEGKRDGNSYLINLIDSPGHIDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL 143

Query: 740 R 742
           R
Sbjct: 144 R 144


>04_04_1386 -
           33166470-33166705,33166811-33167087,33167240-33167508,
           33167658-33167882,33168020-33168080
          Length = 355

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
 Frame = -2

Query: 540 SAIFLCRSGSPFLLLSIDHFIEFV-------RKVSRSGTLELINSNNFANFETHSSLGLV 382
           S +F   SG+P L   +DHF + V       R +  S  L  ++ N++A     +    +
Sbjct: 127 SGVFKLPSGAPTLDKQVDHFRDLVQDGTITRRNLRNSIALVAVSGNDYARLANVNDTSKM 186

Query: 381 SDFVKASTKSIAR 343
             FV   T  IA+
Sbjct: 187 IKFVDEVTSEIAK 199


>01_03_0281 - 14570635-14574633
          Length = 1332

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 590 VKSVYEQLCTFFPSKILLLFSCVGVGHL 507
           +KS+ E++C  +  + L L  C+ +GHL
Sbjct: 604 IKSLPEEICILYNLQTLNLSGCISLGHL 631


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,830,003
Number of Sequences: 37544
Number of extensions: 416811
Number of successful extensions: 1004
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)