Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_J06
(923 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC051302-1|AAH51302.1| 125|Homo sapiens mitochondrial ribosomal... 73 1e-12
BC010076-1|AAH10076.1| 125|Homo sapiens mitochondrial ribosomal... 73 1e-12
BC004976-1|AAH04976.2| 125|Homo sapiens mitochondrial ribosomal... 73 1e-12
BC000547-1|AAH00547.2| 125|Homo sapiens mitochondrial ribosomal... 73 1e-12
AY061855-1|AAL35739.1| 125|Homo sapiens mitochondrial ribosomal... 73 1e-12
AB049942-1|BAB40995.1| 166|Homo sapiens mitochondrial ribosomal... 73 1e-12
BC042752-1|AAH42752.1| 96|Homo sapiens MRPS6 protein protein. 51 5e-06
AB051347-1|BAB54937.1| 35|Homo sapiens mitochondrial ribosomal... 40 0.017
>BC051302-1|AAH51302.1| 125|Homo sapiens mitochondrial ribosomal
protein S6 protein.
Length = 125
Score = 73.3 bits (172), Expect = 1e-12
Identities = 34/84 (40%), Positives = 47/84 (55%)
Frame = +1
Query: 163 MPTXXLALLLRNMPKPELKTSLKXXSHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKE 342
MP LAL+L+ M +PE +LK A+ D G I+R++ENLG R +PY+ +AH H
Sbjct: 1 MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR 60
Query: 343 ANYFIFKIDTPTKAVIDLKEEYKR 414
YF+ PT AV + E R
Sbjct: 61 GGYFLVDFYAPTAAVESMVEHLSR 84
>BC010076-1|AAH10076.1| 125|Homo sapiens mitochondrial ribosomal
protein S6 protein.
Length = 125
Score = 73.3 bits (172), Expect = 1e-12
Identities = 34/84 (40%), Positives = 47/84 (55%)
Frame = +1
Query: 163 MPTXXLALLLRNMPKPELKTSLKXXSHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKE 342
MP LAL+L+ M +PE +LK A+ D G I+R++ENLG R +PY+ +AH H
Sbjct: 1 MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR 60
Query: 343 ANYFIFKIDTPTKAVIDLKEEYKR 414
YF+ PT AV + E R
Sbjct: 61 GGYFLVDFYAPTAAVESMVEHLSR 84
>BC004976-1|AAH04976.2| 125|Homo sapiens mitochondrial ribosomal
protein S6 protein.
Length = 125
Score = 73.3 bits (172), Expect = 1e-12
Identities = 34/84 (40%), Positives = 47/84 (55%)
Frame = +1
Query: 163 MPTXXLALLLRNMPKPELKTSLKXXSHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKE 342
MP LAL+L+ M +PE +LK A+ D G I+R++ENLG R +PY+ +AH H
Sbjct: 1 MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR 60
Query: 343 ANYFIFKIDTPTKAVIDLKEEYKR 414
YF+ PT AV + E R
Sbjct: 61 GGYFLVDFYAPTAAVESMVEHLSR 84
>BC000547-1|AAH00547.2| 125|Homo sapiens mitochondrial ribosomal
protein S6 protein.
Length = 125
Score = 73.3 bits (172), Expect = 1e-12
Identities = 34/84 (40%), Positives = 47/84 (55%)
Frame = +1
Query: 163 MPTXXLALLLRNMPKPELKTSLKXXSHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKE 342
MP LAL+L+ M +PE +LK A+ D G I+R++ENLG R +PY+ +AH H
Sbjct: 1 MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR 60
Query: 343 ANYFIFKIDTPTKAVIDLKEEYKR 414
YF+ PT AV + E R
Sbjct: 61 GGYFLVDFYAPTAAVESMVEHLSR 84
>AY061855-1|AAL35739.1| 125|Homo sapiens mitochondrial ribosomal
protein S6 protein.
Length = 125
Score = 73.3 bits (172), Expect = 1e-12
Identities = 34/84 (40%), Positives = 47/84 (55%)
Frame = +1
Query: 163 MPTXXLALLLRNMPKPELKTSLKXXSHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKE 342
MP LAL+L+ M +PE +LK A+ D G I+R++ENLG R +PY+ +AH H
Sbjct: 1 MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR 60
Query: 343 ANYFIFKIDTPTKAVIDLKEEYKR 414
YF+ PT AV + E R
Sbjct: 61 GGYFLVDFYAPTAAVESMVEHLSR 84
>AB049942-1|BAB40995.1| 166|Homo sapiens mitochondrial ribosomal
protein S6 protein.
Length = 166
Score = 73.3 bits (172), Expect = 1e-12
Identities = 34/84 (40%), Positives = 47/84 (55%)
Frame = +1
Query: 163 MPTXXLALLLRNMPKPELKTSLKXXSHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKE 342
MP LAL+L+ M +PE +LK A+ D G I+R++ENLG R +PY+ +AH H
Sbjct: 42 MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR 101
Query: 343 ANYFIFKIDTPTKAVIDLKEEYKR 414
YF+ PT AV + E R
Sbjct: 102 GGYFLVDFYAPTAAVESMVEHLSR 125
>BC042752-1|AAH42752.1| 96|Homo sapiens MRPS6 protein protein.
Length = 96
Score = 51.2 bits (117), Expect = 5e-06
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +1
Query: 253 DCGGIIRNIENLGFRPMPYKSTAHGMTHKEANYFIFKIDTPTKAVIDLKEEYKR 414
D G I+R++ENLG R +PY+ +AH H YF+ PT AV + E R
Sbjct: 2 DRGAIVRDLENLGERALPYRISAHSQQHNRGGYFLVDFYAPTAAVESMVEHLSR 55
>AB051347-1|BAB54937.1| 35|Homo sapiens mitochondrial ribosomal
protein S6 protein.
Length = 35
Score = 39.5 bits (88), Expect = 0.017
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 244 AIFDCGGIIRNIENLGFRPMPYKSTAHGMTH 336
A+ D G I+R++ENLG R +PY+ +AH H
Sbjct: 1 ALMDRGAIVRDLENLGERALPYRISAHSQQH 31
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,212,240
Number of Sequences: 237096
Number of extensions: 1769785
Number of successful extensions: 2070
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2070
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12047931574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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