Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_J06
         (923 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46787-6|CAA86744.1|  392|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U88168-7|AAC24396.2|  132|Caenorhabditis elegans Hypothetical pr...    29   6.2  
AF000264-8|AAK70649.2|  165|Caenorhabditis elegans Hypothetical ...    29   6.2  

>Z46787-6|CAA86744.1|  392|Caenorhabditis elegans Hypothetical
           protein C16C10.6 protein.
          Length = 392

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 11/21 (52%), Positives = 18/21 (85%)
 Frame = +2

Query: 398 KRNTKEDVDIVRQRFFKVKEE 460
           +RNT+ED++  RQR+F+ KE+
Sbjct: 365 QRNTEEDIEAARQRYFERKEQ 385


>U88168-7|AAC24396.2|  132|Caenorhabditis elegans Hypothetical
           protein K11H12.6 protein.
          Length = 132

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 368 IHPPKQL*T*KRNTKEDVDIVRQRFFKVKEEERK--ACTLEGGTSASCIS*RCSKN 529
           +H P      ++ +KE + I+R+  +  +E ERK    T   G  A+C+  +CS+N
Sbjct: 51  LHEPVGCRVTRQYSKEKMWIIRECGYLGEERERKFNTTTYLNGEPATCVFSQCSEN 106


>AF000264-8|AAK70649.2|  165|Caenorhabditis elegans Hypothetical
           protein F43E2.11 protein.
          Length = 165

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -3

Query: 366 YLKDKIVGFFVGHTMCSGLVRHWSKS*IFYVSDDSSAIEYSM 241
           +LK    GFFV H MC+G +       I  V +   A   +M
Sbjct: 8   FLKQGSTGFFVAHFMCAGFINQQQAEIIIRVPERPVAAAATM 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,501,323
Number of Sequences: 27780
Number of extensions: 305199
Number of successful extensions: 570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)