Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_J05
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom... 151 1e-37
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|... 116 6e-27
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|... 110 2e-25
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 32 0.13
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 30 0.39
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 2.7
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 27 4.8
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 26 6.3
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida... 26 8.3
>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 171
Score = 151 bits (367), Expect = 1e-37
Identities = 72/92 (78%), Positives = 84/92 (91%)
Frame = +1
Query: 178 FPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 357
FP GR+ R LK +T ++ RVGA +AVYSAA+LEYLTAEVLELAGNA+KDLKVKRITPRHL
Sbjct: 66 FPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRITPRHL 125
Query: 358 QLAIRGDEELDSLIKATIAGGGVIPHIHKSLI 453
QLAIRGDEELD+LI+ATIAGGGV+PHI+K L+
Sbjct: 126 QLAIRGDEELDTLIRATIAGGGVLPHINKQLL 157
>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 116 bits (278), Expect = 6e-27
Identities = 60/102 (58%), Positives = 74/102 (72%), Gaps = 1/102 (0%)
Frame = +1
Query: 178 FPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 357
FP GR+HR L+ + RVGA A VY AA+LEYL AE+LELAGNA++D K RI PRHL
Sbjct: 27 FPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHL 85
Query: 358 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 480
QLAIR DEEL+ L+ TIA GGV+P+I+ L+ K+ G G P
Sbjct: 86 QLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGKP 127
>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
3|||Manual
Length = 132
Score = 110 bits (265), Expect = 2e-25
Identities = 58/98 (59%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Frame = +1
Query: 178 FPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 357
FP GR+HR L+ + RVGA A VY AA+LEYL AE+LELAGNA++D K RI PRHL
Sbjct: 27 FPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHL 85
Query: 358 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 468
QLAIR DEEL+ L+ TIA GGV+P+I+ L+ K G
Sbjct: 86 QLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKTSG 123
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +1
Query: 172 SXFPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 351
S FP RI + + G+V V + LE +++ + ++ + KR+T
Sbjct: 22 SRFPVARIKK-IMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVS 80
Query: 352 HLQLAIRGDEELDSL 396
HL+ A++ E+ D L
Sbjct: 81 HLKHAVQSVEQFDFL 95
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 30.3 bits (65), Expect = 0.39
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 264 RYFGISYSRGFGVGGKCV*RFKSEAYYSSALTTCY 368
+Y G +YS G V GKCV +F + + +T Y
Sbjct: 311 QYLGTNYSNGTAVDGKCVTQFDNVGFLVGTSSTRY 345
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -2
Query: 377 SPLIASCKCRGVIRFTFKS-LDAFPANSKTSAVRYSKIAAE*TAAVAPTRPWLVVLFLRC 201
SPL CKC G IR+ + L + +SK + K E T + + P + + C
Sbjct: 19 SPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKFEFTKVYSESMPRTIPFTILC 78
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 482 FNFKL*DDKIILHLIPAV*HTCT 550
FN K DK++ HL+P H C+
Sbjct: 349 FNLKSQLDKVVFHLVPDYKHRCS 371
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 163 SRTSXFPXGRIHRHLKNRTTSHGRVGAT 246
S T+ FP G+ +R +RTTS V +T
Sbjct: 162 SETTKFPLGKSYRPKASRTTSSQSVAST 189
>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
imidazole acetol phosphate transaminase
His3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 316 SKDLKV-KRITPRHLQLAIRGDEELDSLIKATIAGG 420
+K+L + K +TP ++ + + DE +DSLI+ + G
Sbjct: 69 NKELSITKPLTPDNICMGVGSDEIIDSLIRISCIPG 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,979
Number of Sequences: 5004
Number of extensions: 57759
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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