Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_J03
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    24   2.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.8  

>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 23.8 bits (49), Expect(2) = 2.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 696  PPPPPPXXXXKKK 658
            PPPPPP    +KK
Sbjct: 1096 PPPPPPPAEVEKK 1108



 Score = 21.8 bits (44), Expect(2) = 2.7
 Identities = 8/21 (38%), Positives = 8/21 (38%)
 Frame = -1

Query: 741  PXXPXGXGXFXXXXXPPPPPP 679
            P  P           PPPPPP
Sbjct: 1080 PSAPVANNVSKPSAVPPPPPP 1100


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -1

Query: 741 PXXPXGXGXFXXXXXPPPPPPXXXXKKK 658
           P  P     F     PPPPPP    KK+
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -1

Query: 741 PXXPXGXGXFXXXXXPPPPPPXXXXKKK 658
           P  P   G       PPPPPP    K+K
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 695 PPPPPPXXXKKKXXK 651
           PPPPPP   KK+  K
Sbjct: 25  PPPPPPGYVKKRKNK 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,931,828
Number of Sequences: 5004
Number of extensions: 29049
Number of successful extensions: 189
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)