Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_J03
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0328 + 21035231-21036931                                         31   0.94 
10_03_0020 - 7126478-7126698,7127665-7127763,7127813-7128140           29   6.6  

>01_05_0328 + 21035231-21036931
          Length = 566

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 56  SPLDIMALTQQILLVIIGVAFVYSCSIDF 142
           +P+ +  LT Q LLV  G AF+Y+  +DF
Sbjct: 438 TPISVFLLTPQFLLVGAGEAFIYTGQLDF 466


>10_03_0020 - 7126478-7126698,7127665-7127763,7127813-7128140
          Length = 215

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = +3

Query: 60  PW-TSWRSHSRYCW*LSA*PLFTR---APLTS 143
           PW TSWRS  R  W LSA P+  R   AP+ S
Sbjct: 43  PWHTSWRSTRRTWWLLSAMPVTARGLHAPIIS 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,137,050
Number of Sequences: 37544
Number of extensions: 328401
Number of successful extensions: 7813
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4828
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)