Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_J01
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    32   0.12 
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    31   0.21 
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    31   0.28 
SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subu...    27   3.5  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    27   4.6  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   8.0  

>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 541 PTLAACVCYAYCAKELGPKLMANRKPFELRNILVVYNMAQTIFSA 675
           P +A  +   Y    +G ++M NR+P  L+ I   YN+  +I SA
Sbjct: 36  PVVATIIISYYLLILVGGRIMRNRQPIRLQKIFQYYNLTFSIASA 80


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 190 LKQYILGKTSVSYFITYISHQXIGSYSNRRF 282
           LK Y+ G T++ +F+TY  +  IG +  + F
Sbjct: 214 LKDYVRGTTTIQHFLTYADNYAIGYFKKQGF 244


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 517 GR*XSSPWPTLAACVCYAYCAKELGPKLMANRKPFELRNILVVYNMAQTIFS 672
           G+   S W ++   +   Y     G  +M NRKP + R +  ++N   TI S
Sbjct: 48  GKTPMSQWSSVIVSITAYYVIILSGRAIMTNRKPLKQRRLFQLHNFILTIIS 99


>SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subunit
           7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 92

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +1

Query: 703 GWWGHYDFXCQ--LVDYSRSPMAMR-MANTCWWYYFSKSQNLWTR 828
           GWWGH     Q  ++ YS SP   R MA     ++ + +QN++ R
Sbjct: 12  GWWGHLGGPKQKGIITYSLSPFQQRPMAG----FFKTSTQNMFRR 52


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 565 YAYCAKELGPKLMANRKPFELRNILVVYNMAQTIFSAWI 681
           +A  A    P   + +  F L+NI+V+ N    ++ AWI
Sbjct: 12  FAVFASSDKPNNCSRKNMFFLKNIIVLSNYLYLLYKAWI 50


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -1

Query: 801 EVVPPTRVRHPHG-HWTPRVIYQLTXKVIVAPPSAHQTLVEYPGAE 667
           E +PP  + H  G H  P  ++    + +  PP  H  L E+ G E
Sbjct: 309 EHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPE 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,092
Number of Sequences: 5004
Number of extensions: 56204
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)