Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_I19
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    64   2e-11
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   9.9  

>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 29/51 (56%), Positives = 41/51 (80%)
 Frame = +1

Query: 640 RLHSIVIGPGLGRDWQTFDIIAKLIEVIKQXKIPIIIDADGLFLIXEKPTL 792
           RLH+IVIGPGLGRD    +I+AK+IE  ++  +P++IDADGL+LI ++P L
Sbjct: 112 RLHAIVIGPGLGRDEWMQEIMAKVIEYARKNDMPMVIDADGLWLIQQRPEL 162



 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 30/60 (50%), Positives = 41/60 (68%)
 Frame = +3

Query: 429 YTGAPYFAGISSLKVSNYSVFRFC*VGADLAHIFCSSVASAVIKSYSPELIVHPLLDKQD 608
           YTGAPY++ +SS+      +F     G+D +HIFC   A+ VIKSYSP+LIVHP L ++D
Sbjct: 43  YTGAPYYSSMSSM------LF-----GSDQSHIFCEKEAANVIKSYSPDLIVHPFLREKD 91



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +2

Query: 326 TSMKNLIKICIPPLDKSSHKGQAGRIGVIGG 418
           T++   +K  IPPL  + HKGQAGR+GV GG
Sbjct: 9   TNLLTRVKRIIPPLLDTFHKGQAGRVGVFGG 39


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 592 Y*ISKMLLRKYYHGFDRLHSIVIGP-GLGRDWQTFDIIAKLIEVIKQXKIPIII 750
           Y +    L+ Y     +  SI+ GP G G+ + T   I  L+E      +PI++
Sbjct: 370 YILDSSQLKAYQSMLTKRLSIIQGPPGTGKSFVTLKAIETLLENTHSHVLPILV 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,696
Number of Sequences: 5004
Number of extensions: 61872
Number of successful extensions: 139
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)