Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_I19
         (829 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z14092-2|CAA78469.2|  307|Caenorhabditis elegans Hypothetical pr...    54   9e-08
U56966-2|AAA98718.1|  755|Caenorhabditis elegans Unidentified vi...    31   1.0  
U53154-13|AAK84501.1|  176|Caenorhabditis elegans Hypothetical p...    28   9.4  

>Z14092-2|CAA78469.2|  307|Caenorhabditis elegans Hypothetical
           protein R107.2 protein.
          Length = 307

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 29/54 (53%), Positives = 34/54 (62%)
 Frame = +3

Query: 429 YTGAPYFAGISSLKVSNYSVFRFC*VGADLAHIFCSSVASAVIKSYSPELIVHP 590
           YTGAPYFA  S+ ++           GADL HIFC   A+ VIK YSP+LIVHP
Sbjct: 32  YTGAPYFAASSASRL-----------GADLIHIFCDPDAAQVIKGYSPDLIVHP 74



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 19/47 (40%), Positives = 32/47 (68%)
 Frame = +1

Query: 640 RLHSIVIGPGLGRDWQTFDIIAKLIEVIKQXKIPIIIDADGLFLIXE 780
           R+ +IVIGPGLGR+   + ++ +L E ++   +P +ID DGL+ + E
Sbjct: 87  RMDAIVIGPGLGRNPNIWPLMQELFEFVRNRDVPFVIDGDGLWFVSE 133



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 332 MKNLIKICIPPLDKSSHKGQAGRIGVIGGSL 424
           M + IK+ +P L     KG  G++GVIGGSL
Sbjct: 1   MDHFIKL-LPKLTPHLRKGDCGKMGVIGGSL 30


>U56966-2|AAA98718.1|  755|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 3 protein.
          Length = 755

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = -2

Query: 669 SRADNYRMESVKXMVIFPQQHLAYLVVDALLILGYMI*LLQKQLKNKIYVPSLHLPNKNG 490
           +RA++++ + VK M I  + H+AY   +A  +L     +LQ++  + IYV   H  N   
Sbjct: 452 NRAEDFQSDFVKTMDIIKEHHVAYGNSNARNMLEVREQILQEKGFDDIYVQKKHAENCTA 511

Query: 489 I 487
           I
Sbjct: 512 I 512


>U53154-13|AAK84501.1|  176|Caenorhabditis elegans Hypothetical
           protein C33G8.13 protein.
          Length = 176

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 196 HMKRMPLSSKLTNYHFIKLNLVKYCSIV 113
           H + +PL  K T ++F   N+V+ C I+
Sbjct: 52  HPRLLPLKDKYTEFYFSFTNIVRECDIL 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,677,511
Number of Sequences: 27780
Number of extensions: 328538
Number of successful extensions: 775
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)