Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_I18
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...   188   7e-49
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...   174   1e-44
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    28   2.1  
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   8.4  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    26   8.4  

>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score =  188 bits (459), Expect = 7e-49
 Identities = 85/136 (62%), Positives = 111/136 (81%)
 Frame = +1

Query: 247 SALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKD 426
           S++Y+V GG RAV+FDR +GV++ VV EGTHF IPW+Q+ I++D+R+RPRN+ T TGSKD
Sbjct: 24  SSIYDVPGGKRAVLFDRLSGVQKQVVQEGTHFLIPWLQKAIVYDVRTRPRNIATTTGSKD 83

Query: 427 LQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQRE 606
           LQ V++TLR+L RP    LP+IY  LG+DYDERVLPSI +E+LK+VVAQFDA ELITQRE
Sbjct: 84  LQMVSLTLRVLHRPEVGMLPQIYQNLGLDYDERVLPSIGNEILKSVVAQFDAAELITQRE 143

Query: 607 IVSQKVNDSLTERAAQ 654
           +VS K+   L +RA +
Sbjct: 144 VVSAKIRQELVQRATE 159



 Score = 70.5 bits (165), Expect = 3e-13
 Identities = 31/44 (70%), Positives = 40/44 (90%)
 Frame = +2

Query: 653 KFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLGRES 784
           +FG+ L+D+SITH+TFGKEFT+AVE KQ+AQQEAE+ARFL  +S
Sbjct: 159 EFGIRLEDVSITHMTFGKEFTKAVERKQIAQQEAERARFLVEQS 202


>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score =  174 bits (424), Expect = 1e-44
 Identities = 79/136 (58%), Positives = 107/136 (78%)
 Frame = +1

Query: 247 SALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKD 426
           ++L+NVDGGHRA+ + R  G+K L+  EGTHF IPW++  I +D+R++PRN+ ++TG+KD
Sbjct: 34  TSLFNVDGGHRAIKYSRIGGIKNLIYPEGTHFLIPWIETAIDYDVRAKPRNISSLTGTKD 93

Query: 427 LQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQRE 606
           LQ VNI  R+L RP    LP+IY  LG DYDERVLPSI +EVLK+VVAQF+A +LITQRE
Sbjct: 94  LQMVNINCRVLSRPDVHALPKIYRTLGGDYDERVLPSIVNEVLKSVVAQFNASQLITQRE 153

Query: 607 IVSQKVNDSLTERAAQ 654
            VS+ V ++L +RAA+
Sbjct: 154 RVSRLVRENLMKRAAR 169



 Score = 56.4 bits (130), Expect = 5e-09
 Identities = 24/50 (48%), Positives = 36/50 (72%)
 Frame = +2

Query: 653 KFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLGRES*TTKEG 802
           +F ++LDD+S+TH+ F  EFT AVE KQ+AQQ+A++A F    +   K+G
Sbjct: 169 RFNILLDDVSLTHVQFSPEFTAAVEAKQIAQQDAQRATFYVDRARMEKQG 218


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
 Frame = +1

Query: 334 THFFIPWVQRPIIFDIRSRPRNVP---TITGSKDLQNV----NITLRILFRPVPDQLPRI 492
           TH+ +P +  P+ +DIR  P       T+T   + + +     + L IL   VP  LP I
Sbjct: 519 THYVLPTLLAPLGYDIREHPGGQQFWNTLTAKSEAKTIRSFTKLKLFILLIAVPFALPMI 578

Query: 493 YTI 501
             I
Sbjct: 579 ILI 581


>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 351 RNEEMCAFTNN*LLNTSKSIEDNSSVTTVDIIQCRIDNTSNQCH 220
           +NEE C      LL  S +  DNSS  ++ +  C+     +Q H
Sbjct: 229 KNEEKCTVL---LLKRSNTDVDNSSSLSLTLPLCKFTKNGHQVH 269


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
 Frame = +1

Query: 490 IYTILGIDYDERVLPSITSEVLKAVVAQ----FD---AGELITQREIVSQKVNDSLTERA 648
           IYT+  I   ER+   I  + L A+++Q    FD   AGE+ T+    +  + D L E+ 
Sbjct: 159 IYTVTFIIAGERIARRIRQDYLHAILSQNIGYFDRLGAGEITTRITTDTNFIQDGLGEKV 218

Query: 649 AQI 657
             +
Sbjct: 219 GLV 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,586
Number of Sequences: 5004
Number of extensions: 57650
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)