Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_I17
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...    85   2e-17
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    84   3e-17
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    27   3.5  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   3.5  
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    27   3.5  
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|...    27   4.6  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.1  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score = 84.6 bits (200), Expect = 2e-17
 Identities = 42/69 (60%), Positives = 51/69 (73%)
 Frame = +1

Query: 103 GRKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDG 282
           G +  R +K  PGVTV  S   KDE+IIEGNSLE+VS SAA I+Q   V+NKDIRKFLDG
Sbjct: 117 GERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDG 176

Query: 283 LYVSEKTTV 309
           +YVSE+  +
Sbjct: 177 IYVSERGNI 185



 Score = 31.1 bits (67), Expect = 0.21
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 45  PLTVSPLEGNSIIEIRNFLGEKV 113
           P+ ++  E  +++EIRNFLGE++
Sbjct: 98  PININLTENGTVVEIRNFLGERI 120


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 83.8 bits (198), Expect = 3e-17
 Identities = 41/69 (59%), Positives = 51/69 (73%)
 Frame = +1

Query: 103 GRKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDG 282
           G +  R +K  PGVTV  S   KDE+I+EGNSLE+VS SAA I+Q   V+NKDIRKFLDG
Sbjct: 117 GERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDG 176

Query: 283 LYVSEKTTV 309
           +YVSE+  +
Sbjct: 177 IYVSERGNI 185



 Score = 31.1 bits (67), Expect = 0.21
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 45  PLTVSPLEGNSIIEIRNFLGEKV 113
           P+ ++  E  +++EIRNFLGE++
Sbjct: 98  PININLTENGTVVEIRNFLGERI 120


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 339 YLMFLYVI*HNSCFLRYIKTIQELSDILILD 247
           Y  F++ + H S  L Y KT++E++ + I+D
Sbjct: 788 YYEFIHSL-HQSSLLPYFKTLKEIAHLFIID 817


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +1

Query: 154 NSPKQKDELIIEGNSLEDVSSSAALIQQS 240
           +SPK+K +L ++G  L+ +  + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = +1

Query: 199 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTT 306
           + D+S+SA    + T + N+++ K  +GL+++ +T+
Sbjct: 78  MSDISNSACRASKITALNNRELYKDDNGLFITVQTS 113


>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 405

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 6   FIPTHYRESLRFPPLTVSPLEGNSIIEIRNFLGEKVHQKGKDGTWCD 146
           F+P+   + LR   L  + LE  + ++IRNF        G +  WCD
Sbjct: 292 FVPS-LGQKLRREQLEEAVLETQATLQIRNFSVPFTAFNGGNDIWCD 337


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 768 LPPLSELYRSPQPXDRAQRVSERGSG--RAPNTQTASPRALADSL 640
           LPPL  L   P+P   ++R S+  S   +  N    SP  L+ SL
Sbjct: 463 LPPLGSLSSRPKPSSSSRRRSQSLSAMLKTSNPYMPSPSLLSGSL 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,768
Number of Sequences: 5004
Number of extensions: 49669
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)