Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_I17
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...    93   3e-19
AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical ...    31   1.4  
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr...    29   5.7  
AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical...    28   7.6  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 44/73 (60%), Positives = 54/73 (73%)
 Frame = +1

Query: 103 GRKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDG 282
           G K +RRV +  GV    S  QKDE+++EGN ++ VS +AA IQQST VK KDIRKFLDG
Sbjct: 117 GEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDG 176

Query: 283 LYVSEKTTVVLDD 321
           +YVSEKTT+V  D
Sbjct: 177 IYVSEKTTIVPTD 189



 Score = 33.5 bits (73), Expect = 0.20
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +3

Query: 45  PLTVSPLEGNSIIEIRNFLGEKV 113
           P+ V+  +GN  +EIRNFLGEK+
Sbjct: 98  PINVTLQDGNRTVEIRNFLGEKI 120


>AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical
           protein F35B3.3 protein.
          Length = 113

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -3

Query: 312 HNSCFLRYIKTIQELSDILILDCSRLLDESSRARDIFQ 199
           +N+C LR IK +  L+ +L  + SRL +  SR RD+F+
Sbjct: 25  NNNCKLRQIKPVPNLTRLL--EESRLTNSLSRLRDVFK 60


>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
           protein C08H9.2 protein.
          Length = 1220

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
 Frame = +1

Query: 79  LLRYVTSWGRKYIRRVKMAPGV--TVVNSPKQKDELIIEGNS---LEDVSSSAALIQQST 243
           L R+V   G   I ++K   GV  T+ N     DE+++EG      + V+   A++ +  
Sbjct: 429 LHRHVIGRGGSLISKIKDQHGVQITIPNEETNSDEIVVEGKKEGVKKAVTEIRAIVTKIE 488

Query: 244 TVKNKDI 264
             K++DI
Sbjct: 489 NEKSRDI 495


>AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical
           protein Y56A3A.15 protein.
          Length = 292

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 321 VI*HNSCFLRYIKTIQELSDILILDCSRLLDESSRARD 208
           ++ HN  +L + KT   L DIL+ +CS+   E +   D
Sbjct: 180 ILTHNFYWLEFFKTKVTLDDILVSNCSKFSIEYNNLPD 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,005,753
Number of Sequences: 27780
Number of extensions: 281740
Number of successful extensions: 771
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)