Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_I16
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      96   7e-21
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    29   1.2  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    28   2.2  
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    27   3.8  
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.7  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   8.7  

>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 95.9 bits (228), Expect = 7e-21
 Identities = 50/104 (48%), Positives = 64/104 (61%)
 Frame = +3

Query: 330 MNYIGQFIANFREFYNEINAATLTGAIDVIVVEQPDGSFTCSPFHVRFGKLGVLRSRFKV 509
           M Y+G+   +  + +N IN +TL+GAIDVIVVEQ D +  CSPFHVRFGK  +L    K 
Sbjct: 1   MQYVGRAFDSVTKTWNAINPSTLSGAIDVIVVEQEDKTLACSPFHVRFGKFSLLLPSDKK 60

Query: 510 VDLELNGEPLNIHMKLGESGEAFFVEEVGEDEAECSAHLATSPI 641
           V+  +NG+    +MKLG+ GEAFFV      E      L TSPI
Sbjct: 61  VEFSVNGQLTGFNMKLGDGGEAFFVFAT---ENAVPRELQTSPI 101


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -2

Query: 235 LQLPHNVGTKNTYNVALLRIIIIH--FRNLVWFRYNIYRTNNNIHFFNNLIQEESLCLKN 62
           LQL     +K   N     ++I H  + NL W +Y  Y T  +   FN+ +   S C K 
Sbjct: 243 LQLGSEEWSKEETNQKFEEVLIEHPGYLNL-WMKYAEYFTGISEFTFNDCLNMFSKCFKF 301

Query: 61  MKTRNSNLK 35
           +K + S+ K
Sbjct: 302 LKQKLSDRK 310


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 327  SMNYIGQFIANFREFYNEINAATLTGAIDVIVVEQPDGSFTCSPFHVRFGK--LGVLRSR 500
            S N IG+   + ++  ++I    +     ++ +  P GSF+ +PF   +G+  LG+ R R
Sbjct: 1857 SFNGIGECNLHMQQCASDIGIFLIVKKCAILYLNPPVGSFSVAPFLDAYGETDLGLRRGR 1916


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +3

Query: 291 KTRLYGKPAVMYSMNYIGQFIANFREFYNEINAATLTGAIDVIVVEQPDGSFTCSPFHVR 470
           K ++ G P ++ S+   G  + N R F+  +N        D I    PDG FT + F   
Sbjct: 208 KCQISGMPLLLLSLRP-GTKLGNVR-FHQSVNLKRWKQHPDQIEFIPPDGKFTLASFQTD 265

Query: 471 F 473
           F
Sbjct: 266 F 266


>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +3

Query: 522 LNGEPLNIHMKLGESGEAFFVEEVGEDEAECSA-----HLATSPI 641
           LNG PL+   KL     A F   VG  +  C++      LATSP+
Sbjct: 132 LNGGPLSNSRKLIPKRSAKFSSMVGSSDTRCNSPTTARGLATSPL 176


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 252 RSHENAFNYPIMLGLKTHITSPYSE*L*STLEIWC 148
           RS +N  +YPI L    + ++PY + L   L++ C
Sbjct: 329 RSCQNTISYPIALQCLIYCSNPYFKRLELALKVSC 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,636,135
Number of Sequences: 5004
Number of extensions: 75606
Number of successful extensions: 218
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)