Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_I16
         (932 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   5.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.9  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   6.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   6.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   9.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   9.2  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -2

Query: 229 LPHNVGTKNTYNVALLRIIIIHFRNLVWFRYNIYRTNNNI 110
           L +N   + +  V    +I+ H   +VW  + I+R++ +I
Sbjct: 94  LYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDI 133


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 268 SLTYASFSRKRLQLPHNVGTKNTYNVALLRIIIIHFRNLVW 146
           ++T  +F R  + +    G   + N AL+RII I   +L W
Sbjct: 142 TMTMIAFDRYNVIVKGLSGKPLSINGALIRIIAIWLFSLGW 182


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 268 SLTYASFSRKRLQLPHNVGTKNTYNVALLRIIIIHFRNLVW 146
           ++T  +F R  + +    G   + N AL+RII I   +L W
Sbjct: 108 TMTMIAFDRYNVIVKGLSGKPLSINGALIRIIAIWLFSLGW 148


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 268 SLTYASFSRKRLQLPHNVGTKNTYNVALLRIIIIHFRNLVW 146
           ++T  +F R  + +    G   + N AL+RII I   +L W
Sbjct: 18  TMTMIAFDRYNVIVKGLSGKPLSINGALIRIIAIWLFSLGW 58


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 40  DLSFLFSYFLNKVILL 87
           D+SFLFS   N +++L
Sbjct: 671 DMSFLFSQLYNALLIL 686


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 40  DLSFLFSYFLNKVILL 87
           D+SFLFS   N +++L
Sbjct: 761 DMSFLFSQLYNALLIL 776


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,375
Number of Sequences: 438
Number of extensions: 5276
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)