Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_I15
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     31   1.6  
12_02_1188 + 26801833-26802225                                         30   2.1  
03_06_0149 - 31987183-31987630,31987813-31987874                       30   2.1  
12_01_0816 + 7502669-7503145                                           29   5.0  
07_01_1201 - 11419851-11419913,11420090-11420311                       29   6.6  
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989...    28   8.7  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.7  

>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -1

Query: 649 RELXRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 521
           R L RGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 22  RVLSRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>12_02_1188 + 26801833-26802225
          Length = 130

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 698 GGXVSGKRQGRNRRAHEGAXQGETPGIFIVLSG 600
           GG  SGKR      AHEG  +G  P +++V  G
Sbjct: 33  GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 734 AMRKRHASRREKGGXVSGKRQGRNRRAHEGAXQGETP 624
           A+ + H   R +   +  +R+GR R AHEG   G  P
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIGAEP 112


>12_01_0816 + 7502669-7503145
          Length = 158

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 825 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 694
           R SG  +R V    PAW ER   + ++ +V  E+A      ERR
Sbjct: 8   RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 587 QRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYR 685
           Q+WR+  PTG   + +FP G LP A     PA  R
Sbjct: 27  QQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDR 61


>12_02_1052 -
           25698263-25698394,25698587-25698679,25698945-25698995,
           25699074-25699258,25699361-25699407,25699704-25699918
          Length = 240

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -2

Query: 837 SYRIRRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKA-PRFPKGERRTXIR*AAGSEQ 661
           S R  R+  + R  R  S  W+ RP+    T S+S  +  PRFP   RR  +    GS  
Sbjct: 52  SRRPMRASASSRRRRTPSSTWTPRPSRYGGTPSISTSRGQPRFP---RRRYVLLPPGSLA 108

Query: 660 ES 655
           ES
Sbjct: 109 ES 110


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 304 NESAN---ARGEAVCVLGALPLPRSLTRCAR 387
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,285,689
Number of Sequences: 37544
Number of extensions: 502755
Number of successful extensions: 1507
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)