Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_I12
(915 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 34 0.14
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 0.97
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 2.9
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 2.9
09_06_0172 + 21329904-21331512,21331595-21331740,21332333-213325... 29 6.8
08_02_1049 + 23944526-23945473 29 6.8
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565... 28 9.0
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 34.3 bits (75), Expect = 0.14
Identities = 17/39 (43%), Positives = 17/39 (43%)
Frame = +2
Query: 509 GXXPXPPPKXXXPGXWGGGXGXPPPXGGXXXXPXTXGXP 625
G P PPP PG GG PPP GG P G P
Sbjct: 361 GPSPPPPPP---PGGKKGGPPPPPPKGGASRPPAAPGVP 396
Score = 31.1 bits (67), Expect = 1.3
Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Frame = +2
Query: 761 PPXXXKXXXXPPXKXPXXPPFSK---PXXFPKXXXPFXPXXXGGVSXXPP 901
PP PP K P PP +K P PK P P GG PP
Sbjct: 329 PPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPP 378
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Frame = +2
Query: 518 PXPPPKXXXPGXWGGGXGXPPPXGGXXXXPXTXG----XPXKKIFXKGXXXXPXPK 673
P PPPK P G PPP G P G P KG P PK
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPK 383
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.5 bits (68), Expect = 0.97
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = +2
Query: 473 PXXPXXXGXGFWGXXPXPPPKXXXPGXWGGGXGXPPPXGG 592
P P G G G P PP P G G PPP GG
Sbjct: 1184 PPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGG 1223
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 475 PXPXGXGGGFLGXXPXPPPXXXXPRXLGXGXGXXPPQ 585
P P G FL P PPP P G PPQ
Sbjct: 42 PPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQ 78
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +1
Query: 475 PXPXGXGGGFLGXXPXPPPXXXXPRXLGXGXGXXPP 582
P P G G P PP PR G G G PP
Sbjct: 338 PSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPP 373
Score = 29.5 bits (63), Expect = 3.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 518 PXPPPKXXXPGXWGGGXGXPPP 583
P PPP P G G G PPP
Sbjct: 331 PAPPPPAPSPSAAGAGSGPPPP 352
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 482 PXXXGXGFWGXXPXPPPKXXXPGXWGGGXGXPPPXG 589
P G G P PP P G G G PPP G
Sbjct: 340 PSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPG 375
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = +2
Query: 509 GXXPXPPPKXXXPGXWGGGXGXPPPXGGXXXXPXTXGXPXKK 634
G P PPP PG G G G PPP P G P K
Sbjct: 365 GPGPGPPP---PPGAAGRGGGGPPPP-ALPGGPRARGPPPFK 402
>09_06_0172 +
21329904-21331512,21331595-21331740,21332333-21332556,
21333689-21334448
Length = 912
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 524 PPPKXXXPGXWGGGXGXPPPXG 589
PPP+ P +G G PPP G
Sbjct: 161 PPPQMGPPPPYGSGYAPPPPYG 182
>08_02_1049 + 23944526-23945473
Length = 315
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 487 GXGGGFLGXXPXPPPXXXXP 546
G GGGF G P PPP P
Sbjct: 177 GGGGGFSGFAPRPPPQQPPP 196
>08_01_0656 +
5652383-5653009,5653260-5653736,5654969-5655289,
5655434-5655589,5656062-5656127,5656196-5656315
Length = 588
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 509 GXXPXPPPKXXXPGXWGGGXGXPPP 583
G PP G WGGG PPP
Sbjct: 54 GATSGPPRPASTSGVWGGGGHLPPP 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,803,344
Number of Sequences: 37544
Number of extensions: 217022
Number of successful extensions: 696
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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