Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_I12
(915 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 34 0.16
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 34 0.16
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 34 0.16
AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical ... 32 0.50
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.66
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.66
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.66
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.66
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.66
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 0.87
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 30 2.0
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 29 4.6
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 29 6.1
AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like ... 29 6.1
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +2
Query: 509 GXXPXPPPKXXXPGXWGGGXGXPPPXGGXXXXPXTXGXP 625
G P PPP P G G PPP G P T P
Sbjct: 235 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPP 273
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 518 PXPPPKXXXPGXWGGGXGXPPPXGGXXXXPXTXGXP 625
P PPP P GG PP G P G P
Sbjct: 272 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSP 307
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +2
Query: 509 GXXPXPPPKXXXPGXWGGGXGXPPPXGGXXXXPXTXGXP 625
G P PPP P G G PPP G P T P
Sbjct: 256 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPP 294
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 518 PXPPPKXXXPGXWGGGXGXPPPXGGXXXXPXTXGXP 625
P PPP P GG PP G P G P
Sbjct: 293 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSP 328
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +2
Query: 509 GXXPXPPPKXXXPGXWGGGXGXPPPXGGXXXXPXTXGXP 625
G P PPP P G G PPP G P T P
Sbjct: 241 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPP 279
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 518 PXPPPKXXXPGXWGGGXGXPPPXGGXXXXPXTXGXP 625
P PPP P GG PP G P G P
Sbjct: 278 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSP 313
>AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical
protein C02E7.7 protein.
Length = 66
Score = 32.3 bits (70), Expect = 0.50
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +2
Query: 494 GXGFWGXXPXPPPKXXXPGXWGGGXGXPPP 583
G G G P PPP G GGG PPP
Sbjct: 23 GGGGCGCAPPPPPPACGCGGGGGGYAAPPP 52
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.9 bits (69), Expect = 0.66
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +2
Query: 473 PXXPXXXGXGFWGXXPXPPPKXXXPGXWGGGXGXPPPXGGXXXXPXTXGXP 625
P P G W P PPP PG G PPP P G P
Sbjct: 285 PRPPPPPSSGMW-PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMP 334
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.66
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +2
Query: 509 GXXPXPPPKXXXPGXWGGGXGXPPPXGGXXXXP 607
G P PPP P GG PPP GG P
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/54 (33%), Positives = 19/54 (35%)
Frame = +2
Query: 509 GXXPXPPPKXXXPGXWGGGXGXPPPXGGXXXXPXTXGXPXKKIFXKGXXXXPXP 670
G P PPP P GG PPP G P + G P G P P
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGG---LPPISGGPPPPPPPPGGCPPPPPP 774
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 524 PPPKXXXPGXWGGGXGXPPPXG 589
PPP PG + GG PPP G
Sbjct: 770 PPPPPPPPGGFKGGPPPPPPPG 791
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.66
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +2
Query: 509 GXXPXPPPKXXXPGXWGGGXGXPPPXGGXXXXP 607
G P PPP P GG PPP GG P
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/54 (33%), Positives = 19/54 (35%)
Frame = +2
Query: 509 GXXPXPPPKXXXPGXWGGGXGXPPPXGGXXXXPXTXGXPXKKIFXKGXXXXPXP 670
G P PPP P GG PPP G P + G P G P P
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGG---LPPISGGPPPPPPPPGGCPPPPPP 774
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 524 PPPKXXXPGXWGGGXGXPPPXG 589
PPP PG + GG PPP G
Sbjct: 770 PPPPPPPPGGFKGGPPPPPPPG 791
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.9 bits (69), Expect = 0.66
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +2
Query: 473 PXXPXXXGXGFWGXXPXPPPKXXXPGXWGGGXGXPPPXGGXXXXPXTXGXP 625
P P G W P PPP PG G PPP P G P
Sbjct: 295 PRPPPPPSSGMW-PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMP 344
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.66
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +2
Query: 509 GXXPXPPPKXXXPGXWGGGXGXPPPXGGXXXXP 607
G P PPP P GG PPP GG P
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 355
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/54 (33%), Positives = 19/54 (35%)
Frame = +2
Query: 509 GXXPXPPPKXXXPGXWGGGXGXPPPXGGXXXXPXTXGXPXKKIFXKGXXXXPXP 670
G P PPP P GG PPP G P + G P G P P
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGG---LPPISGGPPPPPPPPGGCPPPPPP 357
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 524 PPPKXXXPGXWGGGXGXPPPXG 589
PPP PG + GG PPP G
Sbjct: 353 PPPPPPPPGGFKGGPPPPPPPG 374
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.5 bits (68), Expect = 0.87
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Frame = +2
Query: 509 GXXPXPPPKXXXPGXWG------GGXGXPPPXGGXXXXPXTXGXP 625
G P PP PG +G GG G PPP G P G P
Sbjct: 408 GYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFP 452
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = +2
Query: 473 PXXPXXXGXGFWGXXPXPPPKXXXPGXWGGGXGXPPPXGGXXXXPXTXGXPXKKIF 640
P P G P PPP P GG PPP GG KKI+
Sbjct: 562 PPPPPPLPQNLSGAPPPPPPP---PPMLGGPPPPPPPPGGLMGPASNDAKTIKKIY 614
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +1
Query: 475 PXPXGXGGGFLGXXPXPPPXXXXPRXLGXGXGXXPP 582
P G GGG P PPP P G G PP
Sbjct: 20 PSAGGGGGGCGCGAPPPPPACAPPPAPACGGGAPPP 55
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform b protein.
Length = 453
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +1
Query: 487 GXGGGFLGXXPXPPPXXXXPRXLGXGXGXXPPQXG 591
G GG + PPP P +G G G P G
Sbjct: 51 GGGGSYAAAPALPPPPPPPPAPIGGGAGYAAPFGG 85
>AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform a protein.
Length = 393
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +1
Query: 487 GXGGGFLGXXPXPPPXXXXPRXLGXGXGXXPPQXG 591
G GG + PPP P +G G G P G
Sbjct: 51 GGGGSYAAAPALPPPPPPPPAPIGGGAGYAAPFGG 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,000,818
Number of Sequences: 27780
Number of extensions: 143742
Number of successful extensions: 611
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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