Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_I11
(917 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.17
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.30
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.9
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 26 8.6
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.5 bits (68), Expect = 0.17
Identities = 24/67 (35%), Positives = 24/67 (35%)
Frame = -2
Query: 889 GGG*KXPPPSPXGGKXXXXXFXXPRGGXXXGXXGGFXGGTTXXFXXXGGGGPXXXEAXXF 710
GGG PPP P GG F G G GGF GG GG G
Sbjct: 194 GGGSGGPPPGP-GGFGGFGGFGGE--GHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Query: 709 LNXXGGG 689
L GGG
Sbjct: 251 LGGFGGG 257
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -2
Query: 562 GGXNXXPPPXPGGRGXXXGXXGXGPKXXXPXPGGGG 455
GG + PPP PGG G G G G GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229
Score = 30.3 bits (65), Expect = 0.40
Identities = 21/62 (33%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Frame = +1
Query: 418 GGGGGXFXXXKXPPPPXXXGXXFLGPXPXPPXKXPGPXGXGGG-XGFXPPXGGXFXFPXX 594
GGG G F PPP G G G G GGG GF GG P
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246
Query: 595 XG 600
G
Sbjct: 247 FG 248
Score = 28.3 bits (60), Expect = 1.6
Identities = 21/66 (31%), Positives = 22/66 (33%)
Frame = -2
Query: 652 GLXXXTGXFGKXFFXGGSPXXGGXXXPPXXGGXNXXPPPXPGGRGXXXGXXGXGPKXXXP 473
G G G+ GG GG P G PGG G G G GP
Sbjct: 206 GFGGFGGFGGEGHHHGGHGGFGGG--PGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGG 263
Query: 472 XPGGGG 455
PGG G
Sbjct: 264 GPGGHG 269
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.30
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +1
Query: 454 PPPPXXXGXXFLGPXPXPPXKXPGPXGXGGGXGFXPP 564
PPPP G GP P PP P P GG + P
Sbjct: 762 PPPPPPPGVAGAGPPPPPP---PPPAVSAGGSRYYAP 795
Score = 30.3 bits (65), Expect = 0.40
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = -1
Query: 572 PPXGGXKPXPPPXPXGPGXFXGGXGXGPKXXXPXXXGGGGFXXXXKXPPPPPXP 411
PP PPP P PG G G P P GG P P P
Sbjct: 752 PPPAPIMGGPPPPPPPPG--VAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 26.6 bits (56), Expect = 4.9
Identities = 24/76 (31%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Frame = +2
Query: 443 LXKXPPPPXXXGXXFWAXXPXP-PXXTPAPXXXGGXXVXXPPXGGXXXSPXXXGTPXKKX 619
L K PPPP P P P PAP GG PP G P P
Sbjct: 728 LLKSPPPPPP-AVIVPTPAPAPIPVPPPAPIM-GGPPPPPPPPGVAGAGPPPPPPPPPAV 785
Query: 620 FSKXPR-XXPQPQXGP 664
+ R P PQ P
Sbjct: 786 SAGGSRYYAPAPQAEP 801
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +3
Query: 456 PPPPGXGXXXFGPXPXXPXKXPRPPGXGGGXXFXP 560
PPPP G GP P P P GG + P
Sbjct: 763 PPPPPPGVAGAGPPP--PPPPPPAVSAGGSRYYAP 795
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.9
Identities = 17/63 (26%), Positives = 19/63 (30%), Gaps = 6/63 (9%)
Frame = -1
Query: 572 PPXGGX---KPXPPPXPXGPGXFXGGXGXGPKXXXPXXXG---GGGFXXXXKXPPPPPXP 411
PP G P PP P P K P K PPPPP P
Sbjct: 258 PPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPP 317
Query: 410 XKK 402
++
Sbjct: 318 SRR 320
Score = 23.4 bits (48), Expect(2) = 2.3
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -2
Query: 469 PGGGGXFXXXKXPPPPPP 416
P G G PPPPPP
Sbjct: 326 PIGNGSSNSSLPPPPPPP 343
Score = 22.6 bits (46), Expect(2) = 2.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 433 PPPPPPXR 410
PPPPPP R
Sbjct: 337 PPPPPPPR 344
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -2
Query: 490 PKXXXPXPGGGGXFXXXKXPPPPPPXRXKK 401
P P P G + PPPPPP KK
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 8.6
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +1
Query: 499 PXPPXKXPGPX-GXGGGXGFXPPXGGXFXFPXXXGNPXKKXFF 624
P PP GP G GG G P GG F G P FF
Sbjct: 76 PPPPGAEGGPGAGFGGFPGAGP--GGARTFHFNMGGPGGAQFF 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,805
Number of Sequences: 5004
Number of extensions: 27384
Number of successful extensions: 181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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