Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_I10
         (918 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    25   1.3  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    25   1.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.8  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 242 CVGALIQTCHCNDGLVFNADRKCVPISDC 328
           C+      C C  G + N  + CVP S C
Sbjct: 63  CIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 242 CVGALIQTCHCNDGLVFNADRKCVPISDC 328
           C+      C C  G + N  + CVP S C
Sbjct: 63  CIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 250 ADASGVSQVRVVAGPQRRGHQSNGHFQGIH 161
           A A+ V    +V+ P    HQ  G   G+H
Sbjct: 380 AVAAAVQSSSIVSSPDSARHQRIGGCNGLH 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,088
Number of Sequences: 438
Number of extensions: 1968
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)