Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_I09
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo...    95   2e-20
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    33   0.054
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    28   1.5  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   6.2  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   8.2  
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    26   8.2  

>SPBC4B4.06 |vps25||ESCRT II complex subunit
           Vps25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 94.7 bits (225), Expect = 2e-20
 Identities = 59/157 (37%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
 Frame = +3

Query: 204 FPRFFTIQPHTETRSKQLEAWEQLITDYLKATKQSTIDIR-EASNTPLFNNIEINRKLSQ 380
           FP FFT Q +  T   Q  AW+  I  + +  +Q++I I  E   + L +N  I+R L  
Sbjct: 9   FPPFFTRQLNDNTWHSQKAAWQMWILLWCRENRQTSITINPELLESSLLHNSTIHRTLPL 68

Query: 381 EAILTILEDMAKAGKAAPIDKS--KNVWEVYWHSLDEWGNMIYNWACNNGFNNSVCTLFE 554
                I+EDM K   A   +K   K+V+ VYW S+ EWGNMI  W  + G   S+CT +E
Sbjct: 69  SVFREIVEDMVKQNLAEWTEKRNPKDVFWVYWRSISEWGNMILKWLSDMGREGSICTFYE 128

Query: 555 LREGDNTADQEFHNLDMNVLVKALKSLEAKGRCELME 665
           L+E      +E   LD  +L K L+ L  KG  ELM+
Sbjct: 129 LQE----QYKEVDCLDEVLLHKVLELLMKKGNIELMK 161


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 33.1 bits (72), Expect = 0.054
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
 Frame = +3

Query: 207 PRF-FTIQPHTETRSKQLEAWEQLITDYLKATKQSTID--IREASNT-PLFNNIEINRKL 374
           PRF F + P   + +  LE  E+L+T Y  ++  +T+D  I + S T  L N+ E N   
Sbjct: 453 PRFKFQLPPRPTSNTLPLEPEEELVTRYSVSSDGNTVDEAITKQSQTFQLVNSNEFNEVN 512

Query: 375 SQEAILTILEDMAKAGKAAPIDKSKNVWEVYWHSLDE 485
           + +   ++ ++ AK        KSKN+  V    LD+
Sbjct: 513 ANDVHKSLRQNCAKLD--FDDSKSKNLLSVECLELDK 547


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
 Frame = +3

Query: 282 DYLKATKQSTIDIREASNTPLFNNIEINRKLSQEAILTILEDMAKAGKAAPIDKSKNVWE 461
           D   +T+    D  + +N  L  NI +N     E  ++ L  + K G+   ++   + + 
Sbjct: 473 DMSASTEMHLKDTEKFANFKLKENI-LNHSSIYERDVSYLPALNKGGRENYLNNRVSSYR 531

Query: 462 VYWHSLDEWGNMIYNWACNNGFNNSVCTLFELRE---GDNTADQEFHNLDMNV 611
           +    L+ +GN + N   ++   N  C L  +++   G NT   ++ NL  N+
Sbjct: 532 LVKPILNSYGNHVLNRIQHDILENHFCCLKNVKDFVCGANTISMQW-NLQKNM 583


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +3

Query: 288 LKATKQSTIDIREASNTPLFNNIEINRKLSQEAILTILEDMAKAGKAAPIDKSKNVWE 461
           L +TK S + I E   + L  ++ ++     +A+   L+  A   KA  +DKS NVWE
Sbjct: 319 LLSTKPSALAISEHRYS-LVESVTLSSLF--DALHETLQLKAATPKAVHVDKSINVWE 373


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 483 EWGNMIYNWACNNGFNNSVCTLFELREGDNTA 578
           +W N I++W  + GF N+  T + + +G +T+
Sbjct: 201 DWANKIWDWTTDVGFVNT--TTYAVYDGADTS 230


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 483 EWGNMIYNWACNNGFNNSVCTLFE 554
           EW N+ Y+W+   GF     T+F+
Sbjct: 206 EWANVAYDWSQRIGFIQEDYTVFD 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,559,203
Number of Sequences: 5004
Number of extensions: 73635
Number of successful extensions: 219
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)