Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_I09
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0129 - 26770543-26770720,26774592-26774719,26774829-267749...   106   3e-23
10_08_0457 + 18076911-18077272,18077356-18077475,18077554-180777...    31   1.2  
07_03_0843 - 21962223-21963815,21963957-21964607                       30   2.1  
01_03_0061 + 12137564-12137573,12137620-12137693,12138818-121389...    29   6.5  

>01_06_0129 -
           26770543-26770720,26774592-26774719,26774829-26774933,
           26775661-26775788,26777332-26777433,26778760-26778861,
           26779777-26779852,26779971-26780059,26780177-26780230,
           26780482-26780614,26780671-26780797,26781590-26781648
          Length = 426

 Score =  106 bits (254), Expect = 3e-23
 Identities = 56/151 (37%), Positives = 82/151 (54%)
 Frame = +3

Query: 213 FFTIQPHTETRSKQLEAWEQLITDYLKATKQSTIDIREASNTPLFNNIEINRKLSQEAIL 392
           FF   P  ETR KQ++ W+ LI DY ++ K   I + E  + PLF+N +I R LS EA  
Sbjct: 58  FFNNSPVRETREKQVQLWKDLILDYCRSQKLYIISLEE--DFPLFSNPKIERSLSHEAKE 115

Query: 393 TILEDMAKAGKAAPIDKSKNVWEVYWHSLDEWGNMIYNWACNNGFNNSVCTLFELREGDN 572
             L  +   G+A  +DK      + W  + +W N I N+  +NG  +SV T+ E+R G  
Sbjct: 116 VFLAALVYEGRAEWMDKGHKKCLILWLRIQDWANYILNFVKDNGLEDSVMTVEEIRSGIE 175

Query: 573 TADQEFHNLDMNVLVKALKSLEAKGRCELME 665
           T   E   +D  VL++ALK LE KG+  + +
Sbjct: 176 TRGTELAGIDRGVLMRALKLLEQKGKAAIFK 206


>10_08_0457 +
           18076911-18077272,18077356-18077475,18077554-18077782,
           18077993-18078652,18079224-18079425,18079521-18079611,
           18079780-18079837
          Length = 573

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +3

Query: 234 TETRSKQLEAWEQLITDYLKATKQSTIDIREASNTPLFNNIEINRKLSQEAILTILEDMA 413
           ++ +   L+    ++ D  ++TK S I  +E  +  L NN+EI      E  L ILED++
Sbjct: 479 SQEKIASLQLTFDIVCDISRSTKNSLITKQELFHNILANNLEIEETGEIEEQLHILEDLS 538


>07_03_0843 - 21962223-21963815,21963957-21964607
          Length = 747

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 10/45 (22%)
 Frame = +3

Query: 498 IYNWACNNGFNNS------VCTLFELREGDNTA----DQEFHNLD 602
           I N+ C++  NNS      +C + + REGDNTA     Q F N+D
Sbjct: 287 IINFDCDHYINNSQAFRAAICFMLDQREGDNTAFVQFPQRFDNVD 331


>01_03_0061 +
           12137564-12137573,12137620-12137693,12138818-12138928,
           12139405-12139509
          Length = 99

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -1

Query: 253 CLDLVSVCGWIVKXRGKVILPR--PRYFCHTRETQPNNYKRLMKIFNYTKMLVIF 95
           C+D + +  W++K R   I  R   +Y+    E + NN  R ++ F +T+ +++F
Sbjct: 17  CVDALGMLMWMMK-RALTIKCRVLTKYYAMASEDKFNNLLRRIEEFEWTQAMIVF 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,146,497
Number of Sequences: 37544
Number of extensions: 445393
Number of successful extensions: 941
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)