Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_I07
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 272 2e-73
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 258 3e-69
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 250 8e-67
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.5
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 30 2.6
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 8.1
08_02_1331 + 26195949-26196132,26196606-26196710,26197270-261981... 28 8.1
07_03_0604 + 19903654-19904598 28 8.1
04_01_0289 + 3830052-3831134,3831141-3831230,3831494-3831525,383... 28 8.1
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 272 bits (668), Expect = 2e-73
Identities = 125/175 (71%), Positives = 142/175 (81%)
Frame = +3
Query: 84 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 263
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 264 SSEALEAGRICCNKYLXKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 443
SSEALEA RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 444 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGTSKDLRIKEVGFHK 608
KPQGT ARV IGQ ++SVR + EALRRAKFKFPG K + ++ GF K
Sbjct: 121 KPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTK 175
Score = 56.8 bits (131), Expect = 2e-08
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +1
Query: 562 PERQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 702
P RQKI S+KWGFTK+ R+E+ KL+ EGR+ +DG Q HG L
Sbjct: 160 PGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 258 bits (633), Expect = 3e-69
Identities = 119/169 (70%), Positives = 136/169 (80%)
Frame = +3
Query: 96 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEA 275
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 276 LEAGRICCNKYLXKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 455
LEA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP G
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTG 431
Query: 456 TVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGTSKDLRIKEVGF 602
T ARVRIGQ ++SVR D A EALRRAKFKFPG + + + GF
Sbjct: 432 TCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGF 480
Score = 55.2 bits (127), Expect = 6e-08
Identities = 24/61 (39%), Positives = 36/61 (59%)
Frame = +1
Query: 562 PERQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDAWRXGSG*DPQC 741
P RQ++ S KWGFT+++RDE+ KL+ EGR+ DG + HG + + G G P
Sbjct: 467 PGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHGSVADRQPGRGVFPPS 526
Query: 742 I 744
+
Sbjct: 527 V 527
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 250 bits (613), Expect = 8e-67
Identities = 115/168 (68%), Positives = 133/168 (79%)
Frame = +3
Query: 105 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEA 284
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 285 GRICCNKYLXKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 464
RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT A
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 123
Query: 465 RVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGTSKDLRIKEVGFHK 608
RV IGQ ++SVR EALRRAKFKFPG K + ++ GF K
Sbjct: 124 RVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTK 171
Score = 52.4 bits (120), Expect = 4e-07
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = +1
Query: 562 PERQKIYVSKKWGFTKYERDEFEKLREEGRLANDG 666
P RQKI S+KWGFTK+ RDE+ +L+ EGR+ DG
Sbjct: 156 PGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDG 190
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.5
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 487 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 395
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 222 PLC-VHLVSDEYEQLSSEALEAGRICCNKYLXKNCG 326
P C +HL SD Y S E ++AG+ C L K G
Sbjct: 592 PRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 441 GKPQGTVARVRIGQPIMSVRSSD 509
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>08_02_1331 +
26195949-26196132,26196606-26196710,26197270-26198127,
26198669-26199458,26200240-26200329,26200636-26200712,
26200797-26201383
Length = 896
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 530 RGSAPCQVQVPRNVKRSTYQRSGVSQS 610
+GS PC+ +VP+ +K++ Y R G+ S
Sbjct: 727 KGSFPCKAKVPKELKKACY-RQGIWSS 752
>07_03_0604 + 19903654-19904598
Length = 314
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 688 PGGTARCSRHWRGGPLHAASQTHH 617
PGG R R G P+H A + HH
Sbjct: 80 PGGRRRRPRRVEGAPVHRARRLHH 103
>04_01_0289 +
3830052-3831134,3831141-3831230,3831494-3831525,
3833690-3834623
Length = 712
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 207 NVDDFPLCVHLVSDEYEQLSSEALEAGR-ICC 299
NV++ P + L+ DE +++ E L AGR I C
Sbjct: 679 NVEEIPTSMDLMKDENDKIQLEILTAGRNIAC 710
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,373,732
Number of Sequences: 37544
Number of extensions: 550897
Number of successful extensions: 1625
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1625
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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