Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_I06
(907 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 45 2e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 30 0.52
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 28 1.6
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 28 1.6
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 28 2.1
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 27 2.8
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 4.8
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 27 4.8
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 6.4
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.4
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 26 8.5
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 26 8.5
SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce... 26 8.5
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 44.8 bits (101), Expect = 2e-05
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +2
Query: 440 PVNPYGTQKALIHQVIKTIKAAQNCLLESPTGSGKTLALLCGTLAWL 580
P PY Q + + +I + + ESPTG+GK+L+L+C +L WL
Sbjct: 16 PYTPYDIQLEFMRSLYSSISDGKIGIFESPTGTGKSLSLICASLTWL 62
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 29.9 bits (64), Expect = 0.52
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 485 IKTIKAAQNCLLESPTGSGKTLALLCGTLAWLQAEI 592
I TI + ++ L +PTGSGKT+A L L LQ +
Sbjct: 77 IPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHV 112
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 28.3 bits (60), Expect = 1.6
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 377 QMGPRKQNEITIM-IAGVKVNLPVNPYGTQKALIHQVIKTIKAAQNCLLESPTGSGKTLA 553
QM K EI+ M I K L ++L++ + K +N L+ +PTG+GKT
Sbjct: 252 QMQGEKLLEISSMDILCRKTFLSYQTLNRIQSLVYPI--AYKTNENMLICAPTGAGKTDV 309
Query: 554 LLCGTLAWLQAEIERIN 604
L L + +E +N
Sbjct: 310 ALLAMLQTISNYVESMN 326
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 292 DSPFKGKPTVKSTKKSEVIKKLFTKEKSPDGPPXAK*N 405
+SP K KPT K K++ + + T +K+P P +K N
Sbjct: 895 ESPMKNKPTKKQHKRAFSMFERPTSQKAPLSPVESKIN 932
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 452 YGTQKALIHQVIKTIKAAQNCLLESPTGSGKTLALLCGTLAWLQA 586
+ T + + I + A ++ L + TGSGKTLA L T+ L A
Sbjct: 109 FETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYA 153
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 434 NLPVNPYGTQKALIHQVIKTIKAAQN 511
N P NPYG K I +IK + + N
Sbjct: 151 NDPTNPYGKTKYAIENIIKDLHTSDN 176
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/20 (60%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Frame = +2
Query: 506 QNCLLESPTGSGKT-LALLC 562
+N LL +PTG+GKT +A+LC
Sbjct: 536 ENILLCAPTGAGKTNVAMLC 555
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 491 TIKAAQNCLLESPTGSGKTLALLCGTLAWLQ 583
++ A LLE P+G+GKT++LL +++ Q
Sbjct: 31 SLDAGGIALLEMPSGTGKTISLLSLIVSYQQ 61
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 6.4
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +1
Query: 295 SPFKGKPTVKSTKKSEVIKKLFTKEKSPDGPPXAK*NNDYDSRSESESTSKPLWDSEGVD 474
SP K +VK KKS+ KK +E S + + + S SESES+S S
Sbjct: 63 SPEPSKKSVKKQKKSK--KK---EESSSESESESSSSESESSSSESESSSSESESSSSES 117
Query: 475 TSGNKDHK 498
+S + +
Sbjct: 118 SSSESEEE 125
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 334 KSEVIKKLFTKEKSPDGPPXAK*NNDYDSRSESESTSKPLWDSEGVDTSGNKDH 495
+S+ K+ F +K P+ +ND +S+ E S+ KP + E + K H
Sbjct: 20 RSKFDKRPFASQKFPENLVPDNSSNDANSQPEEVSSKKPWYVDEKHNLFPKKAH 73
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 8.5
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = +2
Query: 575 WLQAEIERINKLQMESYFEEIFENKMDDSAGNANNRKHVDNPFTSEVSFAKPEYGK-KSI 751
WL IE++ ++E+ E + ++ + D F E+ A K K +
Sbjct: 326 WLPEYIEKLGFEEVEARLELLCREELLYNLEGDFTFSKADLTF-KEICLAFVLMEKEKEL 384
Query: 752 YSSPKKFDSSPRHYAMSLGSPAENITIY 835
S P K D P+HY L + I +Y
Sbjct: 385 ISVPSKSDIKPKHYRKLLKIIEKRINMY 412
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 777 LSNFFGELYMLFLPYSGLAKDTSE 706
LS FG Y LP+SGL D +E
Sbjct: 481 LSTAFGSNYSYDLPFSGLCLDMNE 504
>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 189
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 710 EVSFAKPEYGKKSIYSSPKKFDSSPRHYAMS 802
E+S KP + + S PKKF PR ++S
Sbjct: 19 ELSSKKPVSRFREVISEPKKFTRDPRFDSLS 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,329,278
Number of Sequences: 5004
Number of extensions: 65723
Number of successful extensions: 257
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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