Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_I05
(883 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 195 6e-51
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 164 2e-41
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 118 1e-27
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 113 3e-26
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 108 9e-25
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 108 9e-25
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 107 2e-24
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 105 6e-24
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 105 8e-24
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 103 3e-23
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 102 6e-23
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 101 2e-22
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 101 2e-22
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 97 3e-21
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 95 1e-20
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 93 6e-20
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 85 2e-17
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 83 4e-17
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 78 1e-15
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 78 2e-15
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 77 4e-15
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 73 4e-14
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 72 1e-13
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 39 0.001
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 31 0.16
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 28 2.0
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 27 3.5
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni... 26 6.2
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 26 6.2
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 195 bits (476), Expect = 6e-51
Identities = 102/187 (54%), Positives = 133/187 (71%), Gaps = 4/187 (2%)
Frame = +2
Query: 251 MTENDGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFA 430
M+E+ K F+ LG+ PWLI L L I PT IQ+G I+++L G +CIG AKTGSGKT A
Sbjct: 1 MSEHTRKSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAA 60
Query: 431 FALPIIQHLAEDPYGIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESL 610
FALPII+ ++DP GIFAL+LTPT ELA QI +QF LG L L+ ++ GG D I +S+
Sbjct: 61 FALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSI 120
Query: 611 KLAKRPHIVVAMPGRLADHI--SGCDTFS-LKKIKYLVLDEADRLFSESFQED*KQ-YSV 778
L+KRPH+VVA PGRLAD I +G +T + L++IK+LV+DEADRL S +F +D +SV
Sbjct: 121 DLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSV 180
Query: 779 LYHLRDR 799
L DR
Sbjct: 181 LPASEDR 187
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 164 bits (398), Expect = 2e-41
Identities = 79/161 (49%), Positives = 106/161 (65%)
Frame = +2
Query: 269 KEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPII 448
K F LGV L + LG +TPTPIQ+ I +L D IG A+TGSGKT AFALP+I
Sbjct: 46 KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVI 105
Query: 449 QHLAEDPYGIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLAKRP 628
Q L +P FA+VL PT ELAYQI++QF +G + +R ++ GG D + +++ L+K+P
Sbjct: 106 QELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKP 165
Query: 629 HIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESF 751
H++V PGRL DH+ FSLK +KYL++DEADRL F
Sbjct: 166 HVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDF 206
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 118 bits (283), Expect = 1e-27
Identities = 71/169 (42%), Positives = 93/169 (55%), Gaps = 3/169 (1%)
Frame = +2
Query: 263 DGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALP 442
D +A + P ++ L G P PIQ I G D IG A TGSGKT AF +P
Sbjct: 120 DVSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIP 179
Query: 443 IIQHLAE--DPYGIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKL 616
I++H D + ALV+ PT ELA+QI F ++ +RV +TGG ++ L
Sbjct: 180 ILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLL 239
Query: 617 AKRPHIVVAMPGRLADHISGCD-TFSLKKIKYLVLDEADRLFSESFQED 760
K PH+VVA PGRL I+ + T + KKIK LVLDEADRL +S E+
Sbjct: 240 NKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEE 288
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 113 bits (272), Expect = 3e-26
Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 3/156 (1%)
Frame = +2
Query: 302 LIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQHLAEDPYGI- 478
++K L LG PT IQ I L G D +GAA TGSGKT AF +PI++ L P +
Sbjct: 270 ILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVP 329
Query: 479 --FALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLAKRPHIVVAMPG 652
L+L PT ELA Q T + + VC+ GG + +L KRP IV+A PG
Sbjct: 330 TTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPG 389
Query: 653 RLADHISGCDTFSLKKIKYLVLDEADRLFSESFQED 760
R DH+ F+++ I+ +V+DEADR+ + F ++
Sbjct: 390 RFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADE 425
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 108 bits (260), Expect = 9e-25
Identities = 67/177 (37%), Positives = 102/177 (57%), Gaps = 7/177 (3%)
Frame = +2
Query: 260 NDGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFAL 439
+D ++F+ L + + K + +G T T IQK I LL G D +GAAKTGSGKT AF +
Sbjct: 86 SDIEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLI 145
Query: 440 PIIQHLAEDPY----GIFALVLTPTHELAYQIADQFTILGQPLKLR---VCIVTGGSDQI 598
P I+ L + G ++++PT ELA QI F + + LK IV GG+++
Sbjct: 146 PTIEMLYALKFKPRNGTGVIIISPTRELALQI---FGVAKELLKYHHQTFGIVIGGANRR 202
Query: 599 EESLKLAKRPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFQED*KQ 769
E+ KL K +++VA PGRL DH+ F + ++ LV+DEADR+ F+++ +Q
Sbjct: 203 AEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQ 259
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 108 bits (260), Expect = 9e-25
Identities = 64/170 (37%), Positives = 86/170 (50%), Gaps = 2/170 (1%)
Frame = +2
Query: 248 KMTENDGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTF 427
K F +G+ L++ + G + PTPIQ+ I LL G D +G A+TGSGKT
Sbjct: 62 KKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTA 121
Query: 428 AFALPIIQHLAED--PYGIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIE 601
AF +P+I+HL AL+L+P ELA Q + LR + GG E
Sbjct: 122 AFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEE 181
Query: 602 ESLKLAKRPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESF 751
+ L+ +P IVVA PGR H+ L I+Y+V DEADRLF F
Sbjct: 182 QFSLLSGKPDIVVATPGRFL-HLKVEMKLELSSIEYVVFDEADRLFEMGF 230
Score = 29.1 bits (62), Expect = 0.88
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 748 FSRRLETIFSALPSKRQNLXFSATI 822
F+ +L I ALP+ RQ L FSAT+
Sbjct: 230 FAAQLTEILHALPTSRQTLLFSATL 254
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 107 bits (258), Expect = 2e-24
Identities = 61/165 (36%), Positives = 89/165 (53%), Gaps = 5/165 (3%)
Frame = +2
Query: 275 FAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQH 454
F G +++K++ LG PTPIQ+ ++G D +G + TGSGKT ++ LP I H
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 455 LAEDPY-----GIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLA 619
+ P G LVL PT ELA QI + T G+ ++R V GG + + L
Sbjct: 184 INAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLI 243
Query: 620 KRPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFQ 754
+ I +A PGRL D + T +L+++ YLVLDEADR+ F+
Sbjct: 244 RGVEICIATPGRLLDMLDSNKT-NLRRVTYLVLDEADRMLDMGFE 287
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 105 bits (253), Expect = 6e-24
Identities = 64/166 (38%), Positives = 93/166 (56%), Gaps = 8/166 (4%)
Frame = +2
Query: 287 GVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQHLAED 466
G+ ++K L + + P+ IQ+ I LL D IG A+TGSGKT AF +P+I +++
Sbjct: 255 GLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKL 314
Query: 467 P--------YGIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLAK 622
P G +A+VL PT ELA QI + +PL R V GG E+S ++++
Sbjct: 315 PPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQ 374
Query: 623 RPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFQED 760
HIVVA PGRL D + F L + Y+V+DEADR+ F++D
Sbjct: 375 GAHIVVATPGRLLDCLER-RLFVLSQCTYVVMDEADRMLDMGFEDD 419
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 105 bits (252), Expect = 8e-24
Identities = 59/144 (40%), Positives = 84/144 (58%), Gaps = 4/144 (2%)
Frame = +2
Query: 335 TPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQHLAEDPY----GIFALVLTPT 502
T T IQK CI L G D +GAAKTGSGKT AF +P+I++L + G+ ALV++PT
Sbjct: 61 TLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPT 120
Query: 503 HELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLAKRPHIVVAMPGRLADHISGCD 682
ELA Q + +G+ ++ GG++ EE +L+ R +I+V PGRL HI
Sbjct: 121 RELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLS-RMNILVCTPGRLLQHIDQAV 179
Query: 683 TFSLKKIKYLVLDEADRLFSESFQ 754
F ++ L+LDEADR+ F+
Sbjct: 180 NFDTSGLQMLILDEADRILDMGFR 203
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 748 FSRRLETIFSALPSKRQNLXFSAT 819
F L+ I S+LP RQ + FSAT
Sbjct: 202 FRTTLDAIVSSLPVHRQTMLFSAT 225
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 103 bits (248), Expect = 3e-23
Identities = 63/163 (38%), Positives = 88/163 (53%), Gaps = 7/163 (4%)
Frame = +2
Query: 287 GVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQHLAED 466
G+ I + +LG PT IQ I + +G D IG AKTGSGKT AF LP+ +H+ +
Sbjct: 424 GLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQ 483
Query: 467 -PY----GIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLAKRPH 631
P G A+++TPT ELA QI + + L +R C GG+ ++ L +
Sbjct: 484 RPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAE 543
Query: 632 IVVAMPGRLADHIS--GCDTFSLKKIKYLVLDEADRLFSESFQ 754
IVV PGR+ D +S +L + YLVLDEADR+F F+
Sbjct: 544 IVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFE 586
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 102 bits (245), Expect = 6e-23
Identities = 57/167 (34%), Positives = 89/167 (53%)
Frame = +2
Query: 251 MTENDGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFA 430
+T+ G EF +K L+ + G P+PIQ+ I L+G D + AK G+GKT A
Sbjct: 38 VTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAA 97
Query: 431 FALPIIQHLAEDPYGIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESL 610
F +P ++ + I L+L PT ELA Q + LG+ + ++V + TGG+ ++ +
Sbjct: 98 FVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDII 157
Query: 611 KLAKRPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESF 751
+L HIVV PGR+ D ++G + V+DEAD+L S F
Sbjct: 158 RLNDTVHIVVGTPGRVLD-LAGKGVADFSECTTFVMDEADKLLSPEF 203
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 101 bits (241), Expect = 2e-22
Identities = 59/157 (37%), Positives = 85/157 (54%), Gaps = 12/157 (7%)
Frame = +2
Query: 323 LGIRTPTPIQKGCISRLLTGDD--CIGAAKTGSGKTFAFALPIIQHLAEDPY-------G 475
+ I PT IQ C+ LL DD A+TGSGKT A+ LPI+Q L P G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 476 IFALVLTPTHELAYQIADQFTILGQ-PLKLRV--CIVTGGSDQIEESLKLAKRPHIVVAM 646
I+A+++ PT EL QI + L PL + C V GG + E ++ K +I++
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGT 276
Query: 647 PGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFQE 757
PGRLADH+ + + +++++VLDE DRL F+E
Sbjct: 277 PGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEE 313
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 101 bits (241), Expect = 2e-22
Identities = 56/146 (38%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Frame = +2
Query: 332 RTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQH---LAEDPYGIFALVLTPT 502
+ PTPIQ LL G D +G A+TGSGKT AF +P +Q+ L+++ LV++PT
Sbjct: 186 KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPT 245
Query: 503 HELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLAKRPHIVVAMPGRLADHISGCD 682
ELA Q + L Q L+ +V GG+ + E++ + AK +++ PGRL D I+
Sbjct: 246 RELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQA-RAAKNASVIIGTPGRLLDLIND-G 303
Query: 683 TFSLKKIKYLVLDEADRLFSESFQED 760
+ ++ YLVLDEADR+ F++D
Sbjct: 304 SIDCSQVGYLVLDEADRMLDTGFEQD 329
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 97.1 bits (231), Expect = 3e-21
Identities = 62/182 (34%), Positives = 92/182 (50%), Gaps = 9/182 (4%)
Frame = +2
Query: 257 ENDGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFA 436
E+ K F+ + P L + + PT +Q I L G D + A+TGSGKT A+
Sbjct: 10 ESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYL 69
Query: 437 LPIIQ------HLAEDPYGIFALVLTPTHELA---YQIADQFTILGQPLKLRVCIVTGGS 589
+PI++ + E+ GIFAL+L PT ELA Y + ++ T + + T S
Sbjct: 70 IPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSS 129
Query: 590 DQIEESLKLAKRPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFQED*KQ 769
D ++ L L P IV+A P R H++ L K+K+LV+DEAD + S + ED K
Sbjct: 130 DTVQRPL-LLDLPDIVIATPSRCVVHVAS-GVLPLDKLKFLVIDEADLMLSFGYNEDMKT 187
Query: 770 YS 775
S
Sbjct: 188 LS 189
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 95.1 bits (226), Expect = 1e-20
Identities = 63/188 (33%), Positives = 97/188 (51%), Gaps = 17/188 (9%)
Frame = +2
Query: 245 VKMTENDGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLT-----------GDDC 391
+ + N EF+ L + L+++L I +Q + LL GD C
Sbjct: 118 ITVDPNTTVEFSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVC 177
Query: 392 IGAAKTGSGKTFAFALPIIQHLAEDPYG-IFALVLTPTHELAYQIADQFTILGQPLKLRV 568
+ AA TGSGKT ++ +PI+Q L+ + +V+ PT EL Q+A F L+V
Sbjct: 178 VSAA-TGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQV 236
Query: 569 CIVTGGSDQIEESLKLAK-----RPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADR 733
C TG E+ +L R ++V+ PGRL DHI ++FSL+ ++Y+V+DEADR
Sbjct: 237 CAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADR 296
Query: 734 LFSESFQE 757
L +SFQ+
Sbjct: 297 LLDQSFQD 304
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 92.7 bits (220), Expect = 6e-20
Identities = 53/166 (31%), Positives = 85/166 (51%)
Frame = +2
Query: 260 NDGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFAL 439
N F + +K L++ + G TP+ +Q I ++ G D I A++G+GKT F++
Sbjct: 18 NAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSI 77
Query: 440 PIIQHLAEDPYGIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLA 619
I+Q + AL+L+PT ELA QI + LG + ++ GG+ + KL
Sbjct: 78 GILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLD 137
Query: 620 KRPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFQE 757
H+V PGR+ D I + +K L+LDEAD L ++ F+E
Sbjct: 138 YGQHVVSGTPGRVTDMIRR-RNLRTRNVKMLILDEADELLNQGFKE 182
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 84.6 bits (200), Expect = 2e-17
Identities = 53/153 (34%), Positives = 83/153 (54%), Gaps = 4/153 (2%)
Frame = +2
Query: 290 VKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQHLAEDP 469
+KP L++ + G P+ +Q+ CI + + G D + AK+G GKT F L +Q +
Sbjct: 58 LKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVD 117
Query: 470 YGIFALVLTPTHELAYQIADQFTILGQPL-KLRVCIVTGGSD--QIEESLK-LAKRPHIV 637
+ LVL T ELA+QI +++ + L +R + GG + Q E+ K +K PHIV
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
Query: 638 VAMPGRLADHISGCDTFSLKKIKYLVLDEADRL 736
VA PGRL + + + +K+ VLDE D+L
Sbjct: 178 VATPGRL-NALVREKILKVNSVKHFVLDECDKL 209
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 83.4 bits (197), Expect = 4e-17
Identities = 49/161 (30%), Positives = 79/161 (49%)
Frame = +2
Query: 275 FAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQH 454
F + +KP L++ + G P+ IQ+ I +L D + A++G+GKT F++ ++Q
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 455 LAEDPYGIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLAKRPHI 634
+ AL+L PT ELA QI LG + + GG+ ++ L H+
Sbjct: 81 IDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHV 140
Query: 635 VVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFQE 757
VV PGR+ D I ++ VLDEAD + S F++
Sbjct: 141 VVGTPGRVHDMIQR-RALPTDAVQMFVLDEADEMLSRGFKD 180
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 78.2 bits (184), Expect = 1e-15
Identities = 58/173 (33%), Positives = 78/173 (45%), Gaps = 13/173 (7%)
Frame = +2
Query: 275 FAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQH 454
F + + WL + G + TP+Q I L D + A TGSGKT A+ LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 455 LAE---DPYGIFALVLTPTHELAYQI--------ADQFTILGQPLKLRVCIVTGGSDQIE 601
+ D G+ AL++ PT ELA QI A Q L KL + GG +
Sbjct: 63 VTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLT 122
Query: 602 ESLK--LAKRPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFQ 754
L K P +V+ PGRL + +S S K ++ L+LDEAD L FQ
Sbjct: 123 NDLASFREKNPSVVIGTPGRLNEMLS---HISSKHLEILILDEADTLIDMGFQ 172
Score = 29.5 bits (63), Expect = 0.66
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 748 FSRRLETIFSALPSKRQNLXFSATIN 825
F R L++I S LP +R+ FSAT+N
Sbjct: 171 FQRTLQSIISQLPKQRRTGLFSATMN 196
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 77.8 bits (183), Expect = 2e-15
Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Frame = +2
Query: 302 LIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQHL-AEDPYGI 478
L + L I T IQ+ I + + D + A TGSGKT A+ PI+Q L P G
Sbjct: 57 LCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGY 116
Query: 479 FALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESL-KLAKRPHIVVAMPGR 655
A+++ PT EL QI Q L L++ ++ +++I+E KL ++ + + P R
Sbjct: 117 RAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMR 176
Query: 656 LADHISGCDTFSLKKIKYLVLDEADRLFSESFQE 757
L I S +K+++ V+DEADRLF F E
Sbjct: 177 LVQAIQ--TGLSFEKVEFFVMDEADRLFEPGFIE 208
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 76.6 bits (180), Expect = 4e-15
Identities = 60/180 (33%), Positives = 85/180 (47%), Gaps = 19/180 (10%)
Frame = +2
Query: 272 EFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQ 451
EF + L++ + G PTP+QK I + +G D + A+TGSGKT F PI+
Sbjct: 170 EFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILS 229
Query: 452 HLAED--PYGI-----------------FALVLTPTHELAYQIADQFTILGQPLKLRVCI 574
LA D P + L+L PT EL QI ++ +R C
Sbjct: 230 -LAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCA 288
Query: 575 VTGGSDQIEESLKLAKRPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFQ 754
V GG+D + ++ + ++ A PGRL D I SL IK+LVLDEADR+ F+
Sbjct: 289 VYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDR-GRISLANIKFLVLDEADRMLDMGFE 347
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 73.3 bits (172), Expect = 4e-14
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 7/151 (4%)
Frame = +2
Query: 326 GIRTPTPIQKGCISRLLTGDD-CIGAAKTGSGKTFAFALPIIQHLAE-----DPYGIFAL 487
G TP+Q+ ++ + ++ + AKTG+GKT AF L + + + + I ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 488 VLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLAK-RPHIVVAMPGRLAD 664
+L+PT ELA QI ++ L +RV GG+ ++ E + + ++++A PGRL D
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLED 176
Query: 665 HISGCDTFSLKKIKYLVLDEADRLFSESFQE 757
H+ +LDEADRL F E
Sbjct: 177 HLQNPRILESLSTDSFILDEADRLMDMGFAE 207
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 71.7 bits (168), Expect = 1e-13
Identities = 49/161 (30%), Positives = 84/161 (52%), Gaps = 2/161 (1%)
Frame = +2
Query: 269 KEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGD--DCIGAAKTGSGKTFAFALP 442
K F L +KP L+K + ++ + P+ IQ+ + LL+ + IG +++G+GKT AFAL
Sbjct: 114 KSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALT 173
Query: 443 IIQHLAEDPYGIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLAK 622
++ + A+ L P+ ELA QI D T +G+ +++ G D + + K+
Sbjct: 174 MLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAF--GIKDSVPKGAKIDA 231
Query: 623 RPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSE 745
+ IV+ PG + D + + IK VLDEAD + +
Sbjct: 232 Q--IVIGTPGTVMD-LMKRRQLDARDIKVFVLDEADNMLDQ 269
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 38.7 bits (86), Expect = 0.001
Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Frame = +2
Query: 350 QKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQHLAEDPYGIFALVLTPTHELAY-QIA 526
Q I+ L G I + T SGK+ + +PI+Q L ED A + PT LA Q
Sbjct: 316 QADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLEDNQST-AFFVFPTKSLAQDQKK 374
Query: 527 DQFTILG-QPLKLRVCIVT-GGSDQIEESLKLAKRPHIVVAMPGRLADHI---SGCDTFS 691
IL P + + T G +E + + +I+ P L I + +
Sbjct: 375 SLIDILSYMPTLKNIRVDTFDGDTPLESRESIIRSANIIFTNPDMLHQTILPNANRWYYF 434
Query: 692 LKKIKYLVLDEA 727
K +K VLDEA
Sbjct: 435 FKNLKLFVLDEA 446
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 31.5 bits (68), Expect = 0.16
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 377 TGDDCIGAAKTGSGKTFAFALPIIQHLAEDPYGIFALVLTPTHEL 511
T D A GSGKT L ++ H +++ YG A+ + P E+
Sbjct: 1379 TNDSVFIGAPNGSGKTVCAELALLHHWSQEDYGT-AVYIAPIQEI 1422
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -2
Query: 411 PVLAAPMQSSPVNNRDIQPF--WIGVGVLIPNV-SNCLISHGFTPNTANSFPS 262
P + +PM+ SP N + + P+ +G G + SN S GF P T S PS
Sbjct: 221 PSIPSPMKLSPANQQAMPPYPQMLGPGSISSYTNSNLGPSAGFRPPTFFSSPS 273
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 27.1 bits (57), Expect = 3.5
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Frame = +2
Query: 374 LTGDDCI--GAAKTGSGKTFAFALPIIQHLAEDPYGIFALVLTPTHELAYQIADQFTILG 547
L G +C+ GAAK G F+ A Q A I L PT E A ++A++ +
Sbjct: 19 LKGKNCVVFGAAK---GIGFSIATAFAQ--AGGNVIITYLTTDPT-EKAKKLAEETGVQV 72
Query: 548 QPLKLRVCIVTGGSDQIEESLKLAKRPHIVVAMPG 652
LK+ + +EE K+ K H+VVA G
Sbjct: 73 HTLKIDISRSDTVEAGVEEIQKIFKEIHVVVANAG 107
>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 138 FYPCSIILLL*ADSNNHSAKLIDNYL 215
F+P I+LL+ N + KL+D YL
Sbjct: 123 FFPAYIMLLIQRQEYNKAMKLLDEYL 148
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -3
Query: 455 SAG*WVGQMQMSFLTPFWQLQCSHHQS-IIAIYNLFGLELVF 333
++G W+G +SF TPF I A NLF ++F
Sbjct: 408 TSGNWLGNFMISFFTPFINNAIGFKLGYIYACINLFSSFMIF 449
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,447,236
Number of Sequences: 5004
Number of extensions: 71989
Number of successful extensions: 238
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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