Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_I04
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1008 - 7987936-7988628,7988923-7989102 37 0.024
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165 33 0.39
07_01_1201 - 11419851-11419913,11420090-11420311 30 2.1
12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991... 29 3.6
03_06_0149 - 31987183-31987630,31987813-31987874 29 4.8
12_02_1188 + 26801833-26802225 29 6.4
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171... 29 6.4
04_03_1035 - 21887562-21890030 29 6.4
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.4
01_03_0308 - 14883728-14884120 28 8.4
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 36.7 bits (81), Expect = 0.024
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -2
Query: 722 RKRHASRREKGGQVSGKRQGRNRRAHEGAFQGETPG 615
R R RR GG+V+G+ R+RR GA++GE G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274
>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
Length = 430
Score = 32.7 bits (71), Expect = 0.39
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -3
Query: 643 RELSRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 515
R LSRGK L+S + R PP + + V+ + GGG G P T
Sbjct: 22 RVLSRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 581 QRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRIP 685
Q+WR+ PTG + +FP G LP A PA R P
Sbjct: 27 QQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63
>12_02_0692 -
22197582-22198214,22198761-22198935,22199089-22199185,
22199359-22199473,22199546-22199633,22199972-22200063,
22200138-22200629,22201025-22201048,22201348-22203489
Length = 1285
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +2
Query: 536 GSAPLNEHHKNRRSSQRWRNPTGL*RYQAFPPGKLPRALSCSDPAAYRIPVRLSPFGKR 712
GS N ++ R+S Q+ ++P A P LPRAL+ AA R+P+ P +R
Sbjct: 163 GSGKGNHRNRKRKSHQQRQSP-------AAAPSLLPRALALLADAAGRLPLGEHPDARR 214
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 728 AMRKRHASRREKGGQVSGKRQGRNRRAHEGAFQGETP 618
A+ + H R + + +R+GR R AHEG G P
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIGAEP 112
>12_02_1188 + 26801833-26802225
Length = 130
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 692 GGQVSGKRQGRNRRAHEGAFQGETPGIFIVLSG 594
GG SGKR AHEG +G P +++V G
Sbjct: 33 GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64
>05_03_0682 -
16916437-16916686,16916761-16916822,16917082-16917147,
16917606-16917737,16917925-16918026,16918146-16918343,
16918409-16918555,16918804-16918914,16919661-16920194,
16920269-16920425,16920511-16920660,16920744-16920883,
16921668-16921784,16922759-16922932,16923020-16923187,
16923323-16923464,16923610-16923728,16924997-16925098,
16925618-16925701,16926843-16927142
Length = 1084
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 529 FHRLRPPERASQKSTLKSEVAKPDRTIKIPGVSPWKAPSCALLFRPCR 672
++ R E S + T+K E+ DRT K P + PW CAL PCR
Sbjct: 495 YYNPRESEPNSWEDTMKDEL---DRT-KYPRM-PWHDVQCALYGPPCR 537
>04_03_1035 - 21887562-21890030
Length = 822
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -2
Query: 758 LHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGAFQGE 624
++R +P + + A RR+ GG S R HE AF E
Sbjct: 493 VYRASLPDGREVAIKRAERRDTGGPSSSSAAAARRVDHEAAFVSE 537
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 298 NESAN---ARGEAVCVLGALPLPRSLTRCAR 381
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>01_03_0308 - 14883728-14884120
Length = 130
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +1
Query: 598 DRTIKIPGVSPWKAPSCALLFRP---CRLPDTCPPFSLREAWR 717
+R +I G + PS A L+R C +CPP E WR
Sbjct: 65 ERAPEIGGAVAGRKPSLAELWRRHRRCSCNSSCPPIEREERWR 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,792,300
Number of Sequences: 37544
Number of extensions: 541040
Number of successful extensions: 1729
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1729
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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