Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_I02
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.70 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   8.6  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = -3

Query: 717 RYLYRYVI*FLRYSEFLFKHCLLRMAVLAVIVTPSFVTSFWIFATNYCE 571
           RYL+     F+  +   F  CL+ + V+        + + W+F T++C+
Sbjct: 74  RYLHTATNYFV--TSLAFADCLVGLVVMPFSAIYEVLENRWLFTTDWCD 120


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 341 HMTAKIASLNKQCLKRKE 394
           +MT   A+L  QC+K+K+
Sbjct: 135 NMTVTFANLGIQCVKKKD 152


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 341 HMTAKIASLNKQCLKRKE 394
           +MT   A+L  QC+K+K+
Sbjct: 135 NMTVTFANLGIQCVKKKD 152


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 127 QCVCFVALSFILRFIF 174
           Q VCF  L FI+ F++
Sbjct: 79  QDVCFNDLKFIIEFVY 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,912
Number of Sequences: 438
Number of extensions: 3179
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)