Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_H21
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    34   0.024
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   3.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.4  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 39/151 (25%), Positives = 39/151 (25%), Gaps = 3/151 (1%)
 Frame = +2

Query: 437  PPPPGXXGXFFXXPXPXPPXKTRX-PXXXGGGXXXPXPXGGXXXXXXXGGXPXKKFF*KX 613
            PP P   G     P P P       P         P P G           P        
Sbjct: 1083 PPVPAPSGI---PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGA 1139

Query: 614  PPXGPXPKKXPXWGXXKXAPP-PXKXXKXPP-PFXGGGXPPXXXKKPGVSPXXNPXGXPP 787
            PP        P       APP P      PP P    G PP      GV P   P   PP
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199

Query: 788  VSXXXXKKKXPPXXPPGXXGXXFXPXXGFSP 880
            V         PP  PP        P  G  P
Sbjct: 1200 V--PKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228



 Score = 33.9 bits (74), Expect = 0.032
 Identities = 31/119 (26%), Positives = 32/119 (26%), Gaps = 1/119 (0%)
 Frame = +2

Query: 437  PPPPGXXGXFFXXPXPXPPXKTRXPXXXGGGXXXPXPXGGXXXXXXXGGXPXKKFF*KXP 616
            PP P         P P P   +  P         P P G        G  P  K     P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSI-------PAPSGAPPVPAPSGIPPVPKPSVAAP 1102

Query: 617  PXGPXPKKXPXWGXXKXAPPPXKXXKXPPPF-XGGGXPPXXXKKPGVSPXXNPXGXPPV 790
            P        P       APP  K     PP     G PP         P   P G PPV
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV 1161


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 38/163 (23%), Positives = 45/163 (27%), Gaps = 12/163 (7%)
 Frame = +2

Query: 431 KXPPPPGXXGXFFXXPXPXPPXKTRXPXXXGGGXXXPXPXGGXXXXXXXGGXPXKKFF*K 610
           K PPPP         P P    + + P   G       P          G  P       
Sbjct: 309 KRPPPP---------PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRS 359

Query: 611 XPPXGPXPKKXPXWGXXKXAPPPXKXXKX------PPPFXGG----GXPPXXX-KKPGVS 757
            PP  P P+  P  G     PPP    +       PPP   G      PP     +    
Sbjct: 360 APPP-PPPRSAPSTGRQ---PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTP 415

Query: 758 PXXNPXGXPPVSXXXXKKKXPPXXPPG-XXGXXFXPXXGFSPP 883
           P   P   PP +        PP  P G        P    +PP
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 833 GGXGGGXFFXXAXXKQGGXRXGFXGG 756
           GG GGG         +GG R GF GG
Sbjct: 160 GGFGGGSRGGFGGGSRGGSRGGFRGG 185


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 21/65 (32%), Positives = 23/65 (35%)
 Frame = +2

Query: 593 KKFF*KXPPXGPXPKKXPXWGXXKXAPPPXKXXKXPPPFXGGGXPPXXXKKPGVSPXXNP 772
           +K   K PP  P     P       AP P      PPP    G PP     PGV+    P
Sbjct: 725 QKLLLKSPPPPPPAVIVPT-----PAPAPIPV---PPPAPIMGGPPPPPPPPGVAGAGPP 776

Query: 773 XGXPP 787
              PP
Sbjct: 777 PPPPP 781



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 437 PPPPGXXGXFFXXPXPXPP 493
           PPPPG  G     P P PP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = +2

Query: 719 GXPPXXXKKPGVSPXXNPXGXPPVSXXXXKKKXPP 823
           G PP     PG  P   P   PP      +K   P
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,573
Number of Sequences: 5004
Number of extensions: 22345
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)