Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_H20
(863 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 29 0.85
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 29 0.85
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 28 1.5
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 27 2.6
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 27 4.5
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple... 27 4.5
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 27 4.5
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 27 4.5
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 6.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 6.0
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.9
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 26 7.9
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 29.1 bits (62), Expect = 0.85
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 391 RKIRKLKLDVKKASQSMTRSLDFTNNDDDGSNAENT 498
R++++ + + KK + S+ S + +NND D S E+T
Sbjct: 158 RRLKQKRFETKKNNFSVKESSNLSNNDSDASLDEDT 193
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 29.1 bits (62), Expect = 0.85
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 310 RWSPSRLHPARPACCVDGGSSKT-PSLGLRLF 218
RW R PA +CC G + PS+ LR+F
Sbjct: 172 RWCVRRFSPASNSCCHSGAPVHSGPSMALRIF 203
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 28.3 bits (60), Expect = 1.5
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Frame = +1
Query: 274 QAEPDGALKETTAADH-GNIITK-KGSHSDTDILSANEQKKRKIRKLKLDVKKASQSMTR 447
QA+ D LK+T D+ N+ T G H+D D+ +A +K+R + + ++++ Q +
Sbjct: 50 QAKYD-LLKDTNMTDYVANLWTNLHGGHTDEDMANAFAEKRRSVLQELSELEEEVQGILG 108
Query: 448 SLDFTN-----NDDDGSNAENTPKH 507
L+ + D G N ++ +H
Sbjct: 109 VLENPDLIAALRQDKGQNLQHLQEH 133
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/67 (23%), Positives = 33/67 (49%)
Frame = +1
Query: 307 TAADHGNIITKKGSHSDTDILSANEQKKRKIRKLKLDVKKASQSMTRSLDFTNNDDDGSN 486
+ A+ N+ + + +S N+Q + + +L ++ A+Q +L T+++ D
Sbjct: 493 STAEVSNVRNDESKANSLSEISYNQQSECRSSELNVNEDSANQKEESALG-TSDNSDMYE 551
Query: 487 AENTPKH 507
ENTP H
Sbjct: 552 KENTPIH 558
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/66 (19%), Positives = 30/66 (45%)
Frame = +1
Query: 223 NEDRAKGSLTSRRRHNTQAEPDGALKETTAADHGNIITKKGSHSDTDILSANEQKKRKIR 402
NED + ++ +R+ + + + D GN ++ +D L + ++ KIR
Sbjct: 285 NEDNTQKPISKKRKSKKASHKYLSSRTAPNVDFGNFAKERHRENDVSELYSKTKRTSKIR 344
Query: 403 KLKLDV 420
+L ++
Sbjct: 345 ELYKEI 350
>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
beta subunit Tfg2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 26.6 bits (56), Expect = 4.5
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +1
Query: 280 EPDGALKETTAADHGNIITKKGSHSDTDILSANEQKKRKIRKLKLDVKKASQSMTRSLDF 459
+P+ LKE D I+ K+G ++ L + ++L ++ASQS + S+D
Sbjct: 221 QPEVYLKEVL--DSIAILNKRGPYALKYSLKPEYKGTMDAASVELRNQQASQSESSSIDH 278
Query: 460 TNN----DDDGSNAE 492
T D+ G+NAE
Sbjct: 279 TGKNTSPDNPGTNAE 293
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 341 FFVIMFP*SAAVVSFKAPSGSACVLCRRRLVKDPFAR-SSFVLAKYVIFDNILPECIVHY 165
FF + P +V+ +AP+GS + + PF S +V+ K + + + C HY
Sbjct: 23 FFALFDPLQGPIVACEAPAGSVTNVDGGKNCLLPFETISDYVIPKRELCNKTITVCTNHY 82
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 283 PDGALKETTAADHGNIITKKGSHSDTDILSANEQKKRKIRKL 408
P + + T H N+ KK S +D S+ +K K RKL
Sbjct: 1111 PVSSFAKQTTNKHANLKQKKTHSSKSDKKSSRRRKNEKRRKL 1152
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/62 (27%), Positives = 24/62 (38%)
Frame = +2
Query: 614 RTEEIVEIXXXXXXXXXXXXXEKKEVKMCRKVEQEPDTDSESRQSHQSRSKTRGQNEESV 793
+TEE E E+ VK+ K E D+ SES S + ++EE
Sbjct: 129 KTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEE 188
Query: 794 SV 799
V
Sbjct: 189 EV 190
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 680 KKEVKMCRKVEQEPDTDSESRQSHQSRSKTRGQNEESVS 796
KK+ K +K E +++SES S S + ++ S S
Sbjct: 72 KKQKKSKKKEESSSESESESSSSESESSSSESESSSSES 110
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 627 ISSVLEDESVGESGKSKELSKLNLFSLK 544
+S +L+D V +G ELS+L + SL+
Sbjct: 1264 VSEILDDNFVFNAGNFSELSRLTVLSLE 1291
>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 7.9
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Frame = +1
Query: 376 NEQKKRKIRKLKLDVKKASQSMTRSLDFTNNDDDGSNAENTPKHKL-------LDCKSAE 534
N QKK+KI + KA+ R + D + +EN L L SA
Sbjct: 42 NAQKKKKISLPNVMTSKAAMFAARVASAVDQDPNDEESENFVYENLIPTNDDELHSPSAS 101
Query: 535 VFSFQT 552
+ SFQT
Sbjct: 102 IHSFQT 107
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 311 AVVSFKAPSGSACVLCRRRLVK 246
A+ F+ S +C++CRRR VK
Sbjct: 7 ALKKFRKRSPKSCLICRRRKVK 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,237,305
Number of Sequences: 5004
Number of extensions: 65464
Number of successful extensions: 286
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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