Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_H20
         (863 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    28   0.13 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    28   0.13 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   8.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   8.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 283  PDGALKETT--AADHGNIITKKGSHSDTDILSANEQKKRKIRKLKLDVKKASQSMTRSLD 456
            P  ++ ETT    + GN++   G  SD   LS  E     ++KLKL ++ +  S   + +
Sbjct: 1854 PPISVAETTFVGGNQGNVVPGNGDRSDRPELSEAECDIDSLKKLKLGLRSSLWSRPSTQN 1913

Query: 457  FTNND 471
              ++D
Sbjct: 1914 NPSSD 1918


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 283  PDGALKETT--AADHGNIITKKGSHSDTDILSANEQKKRKIRKLKLDVKKASQSMTRSLD 456
            P  ++ ETT    + GN++   G  SD   LS  E     ++KLKL ++ +  S   + +
Sbjct: 1850 PPISVAETTFVGGNQGNVVPGNGDRSDRPELSEAECDIDSLKKLKLGLRSSLWSRPSTQN 1909

Query: 457  FTNND 471
              ++D
Sbjct: 1910 NPSSD 1914


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 6/11 (54%), Positives = 11/11 (100%)
 Frame = +1

Query: 31  EFLKILFLFWL 63
           E++K++FL+WL
Sbjct: 330 EWVKVVFLYWL 340


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/37 (27%), Positives = 14/37 (37%)
 Frame = -2

Query: 343 LFLLLCFHDRRRWSPSRLHPARPACCVDGGSSKTPSL 233
           L  ++CF     W   R HPA        G   T ++
Sbjct: 192 LSFVICFPPLVGWKDKRSHPAYNMTFAQNGPFNTTTI 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,723
Number of Sequences: 438
Number of extensions: 4327
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)