Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_H19
(864 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 57 3e-09
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 51 2e-07
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 47 3e-06
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 43 6e-05
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 42 9e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 41 3e-04
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 36 0.010
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.069
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 32 0.091
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 32 0.12
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 32 0.12
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 31 0.16
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 30 0.49
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 29 0.64
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 28 1.5
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 27 2.6
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 27 3.4
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.5
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 6.0
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 26 6.0
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 26 7.9
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 57.2 bits (132), Expect = 3e-09
Identities = 26/85 (30%), Positives = 49/85 (57%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
++V N+ Y+ RW ELK+ F +VG+V E+L +G ++GC I+E++ E + A+ +
Sbjct: 68 VYVGNLSYQVRWFELKE-FMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 126
Query: 512 HRYELNGRKLVLKEETGNERRMHTS 586
+ GR + ++E+ R +S
Sbjct: 127 SNQKFMGRLVYIREDREQNARFGSS 151
Score = 50.4 bits (115), Expect = 3e-07
Identities = 22/68 (32%), Positives = 40/68 (58%)
Frame = +2
Query: 347 IPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVMHRYEL 526
+PY RW +LKDLF++ G V ++ + G++RG GIV ++ + A+ ++H +
Sbjct: 190 LPYNVRWQDLKDLFRQ-AGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDF 248
Query: 527 NGRKLVLK 550
GR L ++
Sbjct: 249 MGRTLEVR 256
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 50.8 bits (116), Expect = 2e-07
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLT-DDSGKARGCGIVEFTNTEAMKKALFV 508
LFV N+ +E +LK+ F + VG + V L+T +D+GK +G G V+F + + KA+ +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQ-VGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMEL 288
Query: 509 MHRYELNGRKLVLKEETGNERRMHTSRPQHREGRXN 616
H N +L E+ +RM P R GR N
Sbjct: 289 GH----NSWRLEYGED--RSKRMRNKSPMARSGRFN 318
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 47.2 bits (107), Expect = 3e-06
Identities = 23/70 (32%), Positives = 41/70 (58%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
L VSNI + ++K +F E GD+ +V L DD +++G G +++ N + + AL M
Sbjct: 342 LCVSNIHFNLTDEDVKAIF-EPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 512 HRYELNGRKL 541
+ ++L GR +
Sbjct: 401 NGFDLAGRNM 410
Score = 31.9 bits (69), Expect = 0.12
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKAL 502
+FVS + EL D F E+ G V +++ D SG+++G VEF + ++++ A+
Sbjct: 242 VFVSQLANRLTSRELYDFF-EQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI 298
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 42.7 bits (96), Expect = 6e-05
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 508
++V NIPYE ++ D+FK+ G V +L+ D +SG+ +G G E+ + A+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQS-GPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65
Query: 509 MHRYELNGRKLVLKEETGNERR 574
++ Y+ R+L + T ++ R
Sbjct: 66 LNNYDAGTRRLRVDFPTADQIR 87
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 42.3 bits (95), Expect = 9e-05
Identities = 23/75 (30%), Positives = 41/75 (54%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
L V N+ + W +LKD+ + K G+ + TD + G G+VEF+ E M+ AL +
Sbjct: 100 LIVENLSEDVSWQDLKDVMR-KAGEPTF----TDAHRENPGAGVVEFSTEEDMRNALTSL 154
Query: 512 HRYELNGRKLVLKEE 556
+ + G+ + L+E+
Sbjct: 155 NGEVIKGQAVTLRED 169
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 40.7 bits (91), Expect = 3e-04
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
LF+ N+ E LK F G + +++TD+ GK++G G V +T E KA+ M
Sbjct: 366 LFIKNLQDEVDDERLKAEFSA-FGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEM 424
Query: 512 HRYELNGRKL 541
++ L G+ L
Sbjct: 425 NQRMLAGKPL 434
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 35.5 bits (78), Expect = 0.010
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
+ V NIP+ L D FK+ Y D+G RG F E + + +
Sbjct: 204 IVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQTL 263
Query: 512 HRYELNGRKL 541
+ YE+NGR+L
Sbjct: 264 NGYEINGRRL 273
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 32.7 bits (71), Expect = 0.069
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
+FV + ELK LF + G++ YV++ GK GCG V+F N ++ + A+ +
Sbjct: 305 VFVGGLSKFVSEEELKYLF-QNFGEIVYVKI---PPGK--GCGFVQFVNRQSAEIAINQL 358
Query: 512 HRYELNGRKLVL 547
Y L ++ L
Sbjct: 359 QGYPLGNSRIRL 370
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 508
+FV ++ ++ LF + +++TD + +RG G V FT+ K AL
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247
Query: 509 M 511
M
Sbjct: 248 M 248
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 32.3 bits (70), Expect = 0.091
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
+ + NIP+ + L +F Y D+G RG F + E K + V+
Sbjct: 234 IVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQVL 293
Query: 512 HRYELNGRKL 541
+ YE+ GR+L
Sbjct: 294 NGYEITGRRL 303
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 31.9 bits (69), Expect = 0.12
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 392 EKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFVMHRYELNGRKLVL 547
E+ G + ++ D SG+++G G V+F EA K A+ E++GR + L
Sbjct: 284 EEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNL 336
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 31.9 bits (69), Expect = 0.12
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFT 475
+ VSN+P + ++K+LF + +G V L +G+++G + F+
Sbjct: 57 IIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFS 104
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 31.5 bits (68), Expect = 0.16
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 508
+F+S + Y+ + ++++ F + G + + ++ + +GK+ G V F +K A
Sbjct: 102 MFLSRLSYDTKESDIEREFT-RYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKA 160
Query: 509 MHRYELNGRKLVLKEETG 562
LNGR++V+ E G
Sbjct: 161 SAGLMLNGRRIVVDVERG 178
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 29.9 bits (64), Expect = 0.49
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 374 LKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKAL 502
L+ F+E G ++ V + DD K +G VEF + K L
Sbjct: 172 LEKFFEENAGPISAVRMRRDDDKKFKGSVFVEFKEPDVANKFL 214
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 29.5 bits (63), Expect = 0.64
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 338 VSNIPYEFRWTELKDLFKEKVGDVAYV-ELLTDDSGKARGCGIVEFTNTEAMKKALFVMH 514
V N+ ++ +L D F E V + V + LT+ ++RG G VEF + + AL +
Sbjct: 98 VGNLSFDLTENDLGDFFGEGVTSIRLVIDPLTE---RSRGFGYVEFETADTLSAAL-ALS 153
Query: 515 RYELNGR 535
+L GR
Sbjct: 154 GEDLMGR 160
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/73 (24%), Positives = 30/73 (41%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
+ + N+P+E +++ L G + V + ARG EF A+ +
Sbjct: 723 ILIKNLPFEATKKDVQSLLGA-YGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRAL 781
Query: 512 HRYELNGRKLVLK 550
L GR LVL+
Sbjct: 782 KNTHLLGRHLVLQ 794
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 508
L+V +P+ F +++ F + G V + + + +G ++ +EF + +
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQ-FGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAET 165
Query: 509 MHRYELNGRKLVLK 550
MH Y L G+ L K
Sbjct: 166 MHNYLLYGKLLQCK 179
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 3.4
Identities = 25/87 (28%), Positives = 41/87 (47%)
Frame = +2
Query: 374 LKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKE 553
+KD F++ G + +V++L D R V+F NT+ KAL L+GR + ++
Sbjct: 99 VKDYFQQW-GPLLHVKVLKD--WLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRIER 155
Query: 554 ETGNERRMHTSRPQHREGRXNRDDKDN 634
N R + S H + + D DN
Sbjct: 156 AKVN-RTIRISSAPH-QPYITKKDIDN 180
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 371 ELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVMH 514
EL + ++KV D+A + L +++ + +VEF + K L MH
Sbjct: 305 ELINSLEKKVSDIALEKQLLEEAVERYKLAMVEFAECQRRLKELEAMH 352
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 6.0
Identities = 20/57 (35%), Positives = 25/57 (43%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKAL 502
++V N+P ELK LF +VG Y L G C VEF N +AL
Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQVG---YKRLCFRTKGNGPMC-FVEFENIPYAMEAL 480
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/66 (19%), Positives = 31/66 (46%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
L++SN+P + +++ LFK + +L D ++RG G + + + +
Sbjct: 386 LYISNLPLHWNESDISTLFKP--SKIISNRVLRDSKEQSRGVGFARMQDRKTAEDIINKF 443
Query: 512 HRYELN 529
+ + L+
Sbjct: 444 NNFVLD 449
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 548 KEETGNERRMHTSRPQHREGRXNRDDKDNWGINKPREPE 664
KEE+G R++ P+H + N++ + +N EP+
Sbjct: 16 KEESGESNRVNIEEPEHHD-NSNKESTNLDDLNMLEEPK 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,712
Number of Sequences: 5004
Number of extensions: 52648
Number of successful extensions: 155
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -