Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_H19
(864 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 73 3e-13
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 51 9e-07
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 51 9e-07
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 48 9e-06
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 47 2e-05
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 46 3e-05
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 46 3e-05
Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 43 3e-04
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 43 3e-04
Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical pr... 42 6e-04
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 42 8e-04
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 41 0.001
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 40 0.002
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 40 0.003
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 39 0.005
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 39 0.005
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 39 0.005
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 39 0.005
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 39 0.005
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 39 0.005
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 39 0.005
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 38 0.007
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 38 0.007
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 38 0.007
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 37 0.016
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 34 0.15
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 34 0.15
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 33 0.35
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 31 0.80
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 31 1.1
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 31 1.1
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 31 1.1
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 31 1.1
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 30 1.9
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 30 1.9
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF040642-4|AAN73873.2| 319|Caenorhabditis elegans Hypothetical ... 29 4.3
>Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical
protein C25A1.4 protein.
Length = 454
Score = 72.9 bits (171), Expect = 3e-13
Identities = 31/74 (41%), Positives = 49/74 (66%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
+F++NI YE RW +LK L +EK G+VA+ ELL D +GK +G +VEF E +K + +
Sbjct: 47 VFITNIAYEARWVDLKSLVREKGGEVAFCELLEDRNGKPKGNAVVEFETREGAEKCVENL 106
Query: 512 HRYELNGRKLVLKE 553
+++ GR ++ KE
Sbjct: 107 QKFDWKGRTIIAKE 120
Score = 32.3 bits (70), Expect = 0.46
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 681 IKLQFLESINVQPPLXXKVFVAXSGFKADKPKXGGI-KMAGKV 806
+ ++FL N++PPL ++F+A F K + MAGK+
Sbjct: 172 LNMEFLRQHNIEPPLCERIFIANLAFNVGTDKLYEVFGMAGKI 214
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 51.2 bits (117), Expect = 9e-07
Identities = 29/89 (32%), Positives = 51/89 (57%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
++VSNIP+ FR +L +F G V VE++T+D G ++G G V + E+ +KA +
Sbjct: 53 IYVSNIPFSFREQDLAAMF-FAYGRVLSVEIVTNDRG-SKGFGFVTLDSIESCEKARAAL 110
Query: 512 HRYELNGRKLVLKEETGNERRMHTSRPQH 598
H + GR + ++ T R++ + PQ+
Sbjct: 111 HESHVQGRIIEVRRATPTRRKL-INNPQN 138
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 51.2 bits (117), Expect = 9e-07
Identities = 29/89 (32%), Positives = 51/89 (57%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
++VSNIP+ FR +L +F G V VE++T+D G ++G G V + E+ +KA +
Sbjct: 53 IYVSNIPFSFREQDLAAMF-FAYGRVLSVEIVTNDRG-SKGFGFVTLDSIESCEKARAAL 110
Query: 512 HRYELNGRKLVLKEETGNERRMHTSRPQH 598
H + GR + ++ T R++ + PQ+
Sbjct: 111 HESHVQGRIIEVRRATPTRRKL-INNPQN 138
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 48.0 bits (109), Expect = 9e-06
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 508
LF+ N+PY + +L+ LFK K G+V+ V+++ D +G +G IVEF EA A
Sbjct: 281 LFLRNLPYATKEDDLQFLFK-KYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSA 339
Query: 509 MHRYELNGRKLVLKEETGNERRMHTSRPQHREGRXNRDDKDN 634
+ Y GR + + G+E+R ++ E DD DN
Sbjct: 340 LDGYVFKGRMMHIL--PGDEKR---TKEGEEESEVVPDDPDN 376
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 508
+FV NI Y+ ++ +F K G+V ++++ D ++GK +G G +EF + + + A+
Sbjct: 20 VFVGNISYDVSEDTIRSIFS-KAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRN 78
Query: 509 MHRYELNGRKLVLKEETG 562
++ YEL+GR L + G
Sbjct: 79 LNGYELSGRILRVDSAAG 96
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/86 (33%), Positives = 49/86 (56%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
L VSNIP+ FR +LK +F EK G V+ VE++ ++ G ++G G V + ++A +
Sbjct: 155 LHVSNIPFRFRDPDLKTMF-EKFGVVSDVEIIFNERG-SKGFGFVTMERPQDAERARQEL 212
Query: 512 HRYELNGRKLVLKEETGNERRMHTSR 589
H + GRK+ + T R+H+ +
Sbjct: 213 HGSMIEGRKIEVNCATA---RVHSKK 235
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/86 (33%), Positives = 49/86 (56%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
L VSNIP+ FR +LK +F EK G V+ VE++ ++ G ++G G V + ++A +
Sbjct: 155 LHVSNIPFRFRDPDLKTMF-EKFGVVSDVEIIFNERG-SKGFGFVTMERPQDAERARQEL 212
Query: 512 HRYELNGRKLVLKEETGNERRMHTSR 589
H + GRK+ + T R+H+ +
Sbjct: 213 HGSMIEGRKIEVNCATA---RVHSKK 235
>Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
+FV NI + ++ + E G+VA + + +GK +G G FT+ E +AL ++
Sbjct: 49 VFVGNISDKCSDEFIRKILNE-CGNVASWKRIKGSNGKLQGFGFCHFTDLEGTLRALRIL 107
Query: 512 HRYELNGRKLVLK--EETGNERRMHTSRPQHREGR 610
H + L +KL +K E+ ++ R + + R+G+
Sbjct: 108 HEFHLGDKKLTVKPDEKVRDDLRKNAIENRKRQGK 142
>Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
+FV NI + ++ + E G+VA + + +GK +G G FT+ E +AL ++
Sbjct: 49 VFVGNISDKCSDEFIRKILNE-CGNVASWKRIKGSNGKLQGFGFCHFTDLEGTLRALRIL 107
Query: 512 HRYELNGRKLVLK--EETGNERRMHTSRPQHREGR 610
H + L +KL +K E+ ++ R + + R+G+
Sbjct: 108 HEFHLGDKKLTVKPDEKVRDDLRKNAIENRKRQGK 142
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 508
+FV N+P+E L F ++G V V ++ D D+GK +G V F ++ AL
Sbjct: 248 IFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLAL-S 306
Query: 509 MHRYELNGRKLVLKE--ETGNERRMHTSRPQHREGRXNRDD 625
M ++ R L + + + G+ ++ T++ + G+ N+++
Sbjct: 307 METIKMEKRDLRITKVMKKGHLTKIQTAKKRTSHGKKNQNE 347
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/86 (31%), Positives = 48/86 (55%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
L VSNIP+++R +L +F EKVG V VE++ ++ G ++G G V N + +A
Sbjct: 102 LHVSNIPFKYREPDLTAMF-EKVGPVVDVEIIFNERG-SKGFGFVTMQNPDDADRARAEF 159
Query: 512 HRYELNGRKLVLKEETGNERRMHTSR 589
+ + GR++ + T +R+H +
Sbjct: 160 NGTTIEGRRVEVNLAT---QRVHNKK 182
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/86 (31%), Positives = 48/86 (55%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
L VSNIP+++R +L +F EKVG V VE++ ++ G ++G G V N + +A
Sbjct: 102 LHVSNIPFKYREPDLTAMF-EKVGPVVDVEIIFNERG-SKGFGFVTMQNPDDADRARAEF 159
Query: 512 HRYELNGRKLVLKEETGNERRMHTSR 589
+ + GR++ + T +R+H +
Sbjct: 160 NGTTIEGRRVEVNLAT---QRVHNKK 182
>Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical
protein T07F10.3 protein.
Length = 371
Score = 41.9 bits (94), Expect = 6e-04
Identities = 27/99 (27%), Positives = 47/99 (47%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
L VS++P + EL +F +K ++ G ++G G V F N + AL M
Sbjct: 158 LHVSSVPDDMADAELYRIF-DKYQSCRGAKMFRFVDGSSKGSGFVRFGNQTDQQMALVEM 216
Query: 512 HRYELNGRKLVLKEETGNERRMHTSRPQHREGRXNRDDK 628
HR ++ G +++LK R R + R+ + R+D+
Sbjct: 217 HRTKVGGCRIILK--LAGSRGERLDRGESRQFKSQRNDR 253
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 41.5 bits (93), Expect = 8e-04
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 508
++V N P++ +L + F + G+V+ V ++ D ++G+ RG VEFT A ++A+
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQ-AGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 509 MHRYELNGRKL 541
+ + NGR L
Sbjct: 65 FNGVDFNGRAL 75
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/87 (28%), Positives = 45/87 (51%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
++V N+P + R E++D+F K G + YV++ SG+ VEF + + A+
Sbjct: 11 VYVGNLPGDVREKEVEDIF-HKYGRIKYVDI---KSGRGPAFAFVEFEDHRDAEDAVRAR 66
Query: 512 HRYELNGRKLVLKEETGNERRMHTSRP 592
YE +GR++ ++ G R + RP
Sbjct: 67 DGYEFDGRRIRVEFTRGVGPRGPSGRP 93
Score = 34.7 bits (76), Expect = 0.086
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKAL 502
+ V +P W +LKD ++ GDV Y ++ D G G+VEFT E +K A+
Sbjct: 125 VIVEGLPPTGSWQDLKDHMRD-AGDVCYADVARD------GTGVVEFTRYEDVKYAV 174
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 508
++V N P++ EL + F +G + V ++ D ++G+ RG +EF + ++A+
Sbjct: 7 VYVGNAPFQTTEEELGNFFSS-IGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 509 MHRYELNGRKL 541
M+ E NGR L
Sbjct: 66 MNGAEFNGRPL 76
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/87 (28%), Positives = 44/87 (50%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
++V N+P + R E++D+F K G + YV++ SG+ VEF + + A+
Sbjct: 11 VYVGNLPGDVREKEVEDIF-HKYGRIKYVDI---KSGRGPAFAFVEFEDHRDAEDAVRAR 66
Query: 512 HRYELNGRKLVLKEETGNERRMHTSRP 592
YE +GR++ ++ G R RP
Sbjct: 67 DGYEFDGRRIRVEFTRGVGPRGPGGRP 93
Score = 34.7 bits (76), Expect = 0.086
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKAL 502
+ V +P W +LKD ++ GDV Y ++ D G G+VEFT E +K A+
Sbjct: 125 VIVEGLPPTGSWQDLKDHMRD-AGDVCYADVARD------GTGVVEFTRYEDVKYAV 174
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 508
++V N+PY+ E+ + F VG V V ++ D ++G+ RG VEF+ ++A+
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAA-VGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 509 MHRYELNGRKL 541
++ NGR L
Sbjct: 67 LNGVAFNGRNL 77
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/96 (26%), Positives = 46/96 (47%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
L + N+ + W ++KD ++ + Y E + +A IV FT+ + ++ A+ +
Sbjct: 114 LVIDNLSTRYSWQDIKDHIRKLGIEPTYSEAHKRNVNQA----IVCFTSHDDLRDAMNKL 169
Query: 512 HRYELNGRKLVLKEETGNERRMHTSRPQHREGRXNR 619
+LNGRKL +ET + R + R + R R
Sbjct: 170 QGEDLNGRKLKCTDETRDRSRSRSPRRRSRSRSPTR 205
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
LF+ + + L+++F K G + +L D GK+RGC V FTN A M
Sbjct: 144 LFIGQLSKKHNEENLREIFA-KFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEM 202
Query: 512 H 514
H
Sbjct: 203 H 203
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
LF+ + + L+++F K G + +L D GK+RGC V FTN A M
Sbjct: 144 LFIGQLSKKHNEENLREIFA-KFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEM 202
Query: 512 H 514
H
Sbjct: 203 H 203
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
LF+ + + L+++F K G + +L D GK+RGC V FTN A M
Sbjct: 144 LFIGQLSKKHNEENLREIFA-KFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEM 202
Query: 512 H 514
H
Sbjct: 203 H 203
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
LF+ + + L+++F K G + +L D GK+RGC V FTN A M
Sbjct: 144 LFIGQLSKKHNEENLREIFA-KFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEM 202
Query: 512 H 514
H
Sbjct: 203 H 203
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
LF+ + + L+++F K G + +L D GK+RGC V FTN A M
Sbjct: 144 LFIGQLSKKHNEENLREIFA-KFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEM 202
Query: 512 H 514
H
Sbjct: 203 H 203
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
LF+ + + L+++F K G + +L D GK+RGC V FTN A M
Sbjct: 144 LFIGQLSKKHNEENLREIFA-KFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEM 202
Query: 512 H 514
H
Sbjct: 203 H 203
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 38.3 bits (85), Expect = 0.007
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
++V N + L+ LF K G++ E++T + GK++G G V F N E + A+ +
Sbjct: 155 VYVKNFGDHYNKETLEKLFA-KFGNITSCEVMTVE-GKSKGFGFVAFANPEEAETAVQAL 212
Query: 512 HRYELNGRKL---VLKEETGNERRMHTSRPQHREGRXNRDDKDNWGIN 646
H + G L V + + +ER + +H + + R K G+N
Sbjct: 213 HDSTIEGTDLKLHVCRAQKKSERHAELKK-KHEQHKAERMQKYQ-GVN 258
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 38.3 bits (85), Expect = 0.007
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
++V N + L+ LF K G++ E++T + GK++G G V F N E + A+ +
Sbjct: 152 VYVKNFGDHYNKETLEKLFA-KFGNITSCEVMTVE-GKSKGFGFVAFANPEEAETAVQAL 209
Query: 512 HRYELNGRKL---VLKEETGNERRMHTSRPQHREGRXNRDDKDNWGIN 646
H + G L V + + +ER + +H + + R K G+N
Sbjct: 210 HDSTIEGTDLKLHVCRAQKKSERHAELKK-KHEQHKAERMQKYQ-GVN 255
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 38.3 bits (85), Expect = 0.007
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
++V N + L+ LF K G++ E++T + GK++G G V F N E + A+ +
Sbjct: 215 VYVKNFGDHYNKETLEKLFA-KFGNITSCEVMTVE-GKSKGFGFVAFANPEEAETAVQAL 272
Query: 512 HRYELNGRKL---VLKEETGNERRMHTSRPQHREGRXNRDDKDNWGIN 646
H + G L V + + +ER + +H + + R K G+N
Sbjct: 273 HDSTIEGTDLKLHVCRAQKKSERHAELKK-KHEQHKAERMQKYQ-GVN 318
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 37.1 bits (82), Expect = 0.016
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 511
++V N + L+ +F K G++ E++T + GK++G G V F N E + A+ +
Sbjct: 215 VYVKNFGDHYNKETLEKVFA-KFGNITSCEVMTVE-GKSKGFGFVAFANPEEAETAVQAL 272
Query: 512 HRYELNGRKL---VLKEETGNERRMHTSRPQHREGRXNRDDKDNWGIN 646
H + G L V + + +ER + +H + + R K G+N
Sbjct: 273 HDSTIEGTDLKLHVCRAQKKSERHAELKK-KHEQHKAERMQKYQ-GVN 318
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 33.9 bits (74), Expect = 0.15
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 508
+FV I E +L F + G+VA ++ D +G++RG VEFT E K AL
Sbjct: 31 IFVGGISPEVNNEDLSSHFTQ-YGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLAL-A 88
Query: 509 MHRYELNGRKLVLKEETGNERR 574
+ G+ + +K E +
Sbjct: 89 AREQTIKGKSVEVKPAKSRENK 110
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 33.9 bits (74), Expect = 0.15
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 508
+FV I E +L F + G+VA ++ D +G++RG VEFT E K AL
Sbjct: 31 IFVGGISPEVNNEDLSSHFTQ-YGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLAL-A 88
Query: 509 MHRYELNGRKLVLKEETGNERR 574
+ G+ + +K E +
Sbjct: 89 AREQTIKGKSVEVKPAKSRENK 110
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 32.7 bits (71), Expect = 0.35
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 401 GDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFVMHRYELNGRKL 541
GDV + + D +SGK RG G VEF E A+ M+ EL G+ +
Sbjct: 35 GDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNMNESELFGKTI 82
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 31.5 bits (68), Expect = 0.80
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +2
Query: 338 VSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVMHR 517
V+N+P+ + EL + F EKV D G A + EF++ MK++ + R
Sbjct: 610 VTNVPFRMKDEELLEWFSEKVRPAKLTRTFYSD-GNASDRWVAEFSSESLMKRSFGI--R 666
Query: 518 YELNGRKLVLK 550
GR L L+
Sbjct: 667 TLCTGRTLRLR 677
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +2
Query: 338 VSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFVMH 514
V+N+P E EL+DLF K+G V + + D +G +G V F + + +A+ ++
Sbjct: 180 VTNLPQEMNEDELRDLF-GKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELN 238
Query: 515 RYELNGRKLVLKEE 556
++ +VLK E
Sbjct: 239 --DIRMYHMVLKVE 250
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVA 412
LFV N+P E + TELK+LF GD+A
Sbjct: 118 LFVGNLPNEVKETELKELFSPH-GDIA 143
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVA 412
LFV N+P E + TELK+LF GD+A
Sbjct: 118 LFVGNLPNEVKETELKELFSPH-GDIA 143
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVA 412
LFV N+P E + TELK+LF GD+A
Sbjct: 118 LFVGNLPNEVKETELKELFSPH-GDIA 143
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/95 (22%), Positives = 40/95 (42%)
Frame = +2
Query: 338 VSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVMHR 517
V N+ W +LKD + + + Y E + K ++ F +K+ +
Sbjct: 133 VENLSSRISWQDLKDQVRRQGVEPTYAE-----AHKRPNEALLCFATPSDLKRCIEKCDG 187
Query: 518 YELNGRKLVLKEETGNERRMHTSRPQHREGRXNRD 622
+LNGRK+ + +++ R S + R +RD
Sbjct: 188 MDLNGRKIKMIDDSQAGRSRSRSNSRSRSRSRSRD 222
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 332 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKA 499
+FV +PY L + F E+ GD+ ++TD ++ K+RG G V + + ++A
Sbjct: 37 IFVGGLPYHTSDKTLHEYF-EQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERA 92
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +2
Query: 371 ELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKAL-FVMHRYELNGRKLVL 547
+L D F + GD+ + +LT+ +GC +EFT EA ++A ++ + G++L +
Sbjct: 254 DLNDFFYQ-YGDIRCLRVLTE-----KGCAFIEFTTREAAERAAERSFNKTFIKGKRLTI 307
Query: 548 K 550
+
Sbjct: 308 R 308
>AF040642-4|AAN73873.2| 319|Caenorhabditis elegans Hypothetical
protein C50D2.8 protein.
Length = 319
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 515 RYELNGRKLVLKEETGNERRMHTSRPQHREGRXNRDDKDN 634
R E ++ + ERR H SR HR +RD +D+
Sbjct: 257 RKERREKRAEAATTSDTERRRHRSRSPHRSSHDSRDSRDS 296
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,073,136
Number of Sequences: 27780
Number of extensions: 293706
Number of successful extensions: 805
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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