Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_H18
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    64   3e-11
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    43   5e-05
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    40   6e-04
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    36   0.010
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    35   0.018
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    30   0.50 
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ...    29   0.87 
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    28   1.5  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   2.7  
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom...    27   3.5  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    26   6.1  
SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   6.1  

>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
 Frame = +3

Query: 360 SDLVTGKYEGGLKIWECTYDLLQYLMNNKDIIEFQDKNVLDLGCGAGILGIYALQN---- 527
           +DLV   YEGG K WEC+ DL   +    D+++     VL+LGCG+ I  +   Q     
Sbjct: 92  NDLVPNVYEGGYKTWECSLDLANEI-KKIDVVKNNLTTVLELGCGSAIPILSCFQEFYKH 150

Query: 528 --GANVTFQDYNKEVLENVTIPNVLVN 602
                + FQD+N +VL  VT+PN+L+N
Sbjct: 151 RIPCTLVFQDFNVDVLRYVTLPNLLLN 177



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +3

Query: 699 FDIILSSETIYNESNYVKII-TLFKNRLNNDGSVFLAAKSVYFGVGGGTKQFEKTLEK 869
           F ++L+SETIY+  +    +  L KN  N      +A K +YFGVGG   +F   L+K
Sbjct: 239 FSLVLASETIYSLPSLENFLYMLLKNTKN---LALVAGKDLYFGVGGSILEFNSRLQK 293


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
 Frame = +3

Query: 399 IWECTYDLLQYLMNNKDIIEFQDKNVLDLGCGAGILGIYALQNGAN-VTFQDYNKEVLEN 575
           +W    +L  Y+  N D +  + K VL+LG GAG+  I +  +GA  V   DY    L +
Sbjct: 57  LWNSGIELANYIDKNPDTV--RAKKVLELGAGAGLPSIVSAFDGAKFVVSTDYPDPALID 114

Query: 576 VTIPNVLVNXXXXXXXXXXXXXXXYSGDWTHFNNFLPNNEQFDIILSSETIYNESNYVKI 755
               NV                   +      N    +NE FDI+L S+ ++N + + K+
Sbjct: 115 NLEHNVKQYAEIASKISAVGYLWGSNIKEVMSNAGFKDNEVFDILLLSDLVFNHTEHSKL 174

Query: 756 I 758
           I
Sbjct: 175 I 175


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 20/58 (34%), Positives = 33/58 (56%)
 Frame = +3

Query: 429 YLMNNKDIIEFQDKNVLDLGCGAGILGIYALQNGANVTFQDYNKEVLENVTIPNVLVN 602
           ++ +NK I  F  K VLD+GCG GIL ++  + GA   +   N ++++ + I N   N
Sbjct: 246 FVYHNKHI--FAGKTVLDVGCGTGILSMFCAKAGAKKVYAVDNSDIIQ-MAISNAFEN 300


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 21/53 (39%), Positives = 29/53 (54%)
 Frame = +3

Query: 375 GKYEGGLKIWECTYDLLQYLMNNKDIIEFQDKNVLDLGCGAGILGIYALQNGA 533
           G +E  LK    T      +M N  +  F+DK VLD+GCG GIL ++  + GA
Sbjct: 27  GIHEEMLKDDVRTLSYRDAIMQNPHL--FRDKIVLDVGCGTGILSMFCARAGA 77


>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 34.7 bits (76), Expect = 0.018
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 459 FQDKNVLDLGCGAGILGIYALQNGANVTFQDYNKEVLE 572
           F  K +LD+GCG GIL     + GA+VT  D +   +E
Sbjct: 76  FSGKKILDIGCGGGILSESMARLGASVTAVDASPMAIE 113


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = +3

Query: 159 DEEISWLASEEVKPDKQIKEVDEINLLYLASLPCRETVIRHIMPTKII--AELKNKELQN 332
           ++EI+ L  ++ KP+  + E+ ++  L L S+P  E+V  H   TK+I    + N    N
Sbjct: 81  EKEINELV-DDWKPEPLVAELTDVEKLELKSIPVLESVHLH---TKLIDGRPITNFASFN 136

Query: 333 VLNTAEKEH 359
            L+ AE +H
Sbjct: 137 FLDLAENKH 145


>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +3

Query: 390 GLKIWECTYDLLQYLMNNKDIIEFQDKNVLDLGCGAGILGIYALQNGANVTFQDYNKEVL 569
           G + WE    L +Y+  +   ++     VL+LG G G++ I   + G+ V   D + +V 
Sbjct: 149 GARTWEAGMALAEYIYQHP--VQ-SGMRVLELGAGTGLVSILCAKMGSIVLATDGDTKVC 205

Query: 570 ENV 578
           + V
Sbjct: 206 DGV 208


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
 Frame = +3

Query: 471 NVLDLGCGAGILGI-YALQNGANVTFQDYNKEVLENVTIPNVLVNXXXXXXXXXXXXXXX 647
           N L+LG G G++GI  A+Q G  V   D   +++EN+   NV  N               
Sbjct: 138 NALELGAGTGLVGISAAIQLGWQVVCTDL-PDIVENMQY-NVDYNSELIQQYAGSVSCHV 195

Query: 648 YSGDWTH--FNNFLPN--NEQFDIILSSETIYNESNYVKI-ITLFKNRLNNDGSV 797
              DW +   ++  P+   + F  I++S+ IY E+++ ++ I LF+  L  DG V
Sbjct: 196 L--DWMNPPDDDNRPSWLIKPFQRIIASDCIY-ETHFGELAIALFRKYLAKDGIV 247


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
 Frame = +3

Query: 462 QDKNVLDLGCGAGILGIYALQNGANVTFQDYNKEVLENVTIPNVLVNXXXXXXXXXXXXX 641
           +D NVL+LG G GI+GI             Y + ++      + +               
Sbjct: 182 KDINVLELGSGCGIVGISIASK--------YPRALVSMTDTEDAIEFMEKNVEKNKSAMS 233

Query: 642 XXYSGDWTHFNNFLPN--NEQFDIILSSETIYNESNYVKIITLFKNRLNNDGSVFLAAK 812
              + D   + + +P      +D I+ S+ +YNES++  +    +  ++ +  +++A K
Sbjct: 234 NNITSDILVWGHDIPRKFRRHWDYIVMSDVMYNESSFSDLEASLQELMDKNTKLYIAYK 292


>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 285 MPTKIIAELKNKELQNV-LNTAEKEHSDLVTGKYEGGLKIW 404
           MP+K I + K  + + V ++T   +   +VTG ++G +K+W
Sbjct: 91  MPSKPIHKWKEHKAEIVAIDTNTVDRRIVVTGSWDGTIKLW 131


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +3

Query: 366 LVTGKYEGGLKIW-----ECTYDLLQYLMNNKDIIEFQDKNVLDLGCGAGILGIYALQNG 530
           LV+G Y+  ++IW     EC Y L  + +    ++   ++N+   G     + ++ L  G
Sbjct: 520 LVSGSYDSSIRIWRVSTGECLYHLRGHSLRIYSVLYEPERNICISGSMDKSIRVWDLSTG 579


>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +3

Query: 357 HSDLVTGKYEGGLKIWECTYDLLQYLMNNKDIIEFQDKN-VLDLGCGAGILGIYALQNGA 533
           ++D+  GKY    +I     ++ +  +   ++++ +  + +LD+GCG+GI        G 
Sbjct: 14  YNDVEAGKYSTNTRIQSIQTEMSERAL---ELLDAEGPSFILDIGCGSGISTQIGESQGH 70

Query: 534 NVTFQDYNKEVL 569
            V   D +  +L
Sbjct: 71  VVVGMDISPSML 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,133,555
Number of Sequences: 5004
Number of extensions: 60277
Number of successful extensions: 210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)