Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_H17
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    28   1.5  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   4.5  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    27   4.5  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    26   5.9  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    26   7.8  
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch...    26   7.8  

>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 561 NIDDGNNATDSEDDVPLKS-ILKKDKEKQVPREMSECQKTNRRRSNKRTEQKIDSEEI 731
           N     +ATD E +  ++   + +D+E +VP+E+   +K  +   +   +  +D E++
Sbjct: 52  NDSSEESATDEEAERQVREGFIVEDEEDEVPQEIRRKKKRKKHAESTADQDMLDEEDL 109


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 609 LKSILKKDKEKQVPREMSECQKTNRRRSNKRTEQK-IDSEE 728
           L+ IL+ D+E    R + + ++    RSN   +QK  D++E
Sbjct: 151 LEKILRLDEESAERRRVLQAERAKEHRSNSNDKQKSSDNDE 191


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/50 (26%), Positives = 30/50 (60%)
 Frame = +3

Query: 564 IDDGNNATDSEDDVPLKSILKKDKEKQVPREMSECQKTNRRRSNKRTEQK 713
           ++  NNA +SE +   KS+ ++++++ +    S    TN++  NK+ ++K
Sbjct: 58  LEKENNAINSEAE---KSVSEEEQDEPLVEGESPIVSTNKKAKNKKKKKK 104


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +3

Query: 603 VPLKSILKKDKEK-QVPREMSECQKTNRRRSN 695
           +P+K+ L  ++EK Q+P E++E   TNR + N
Sbjct: 312 LPIKTKLFDEQEKTQLPYEVNEFCSTNREKLN 343


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = +3

Query: 579 NATDSEDDVPLKSILKKDKEKQVPREMSECQKTNRRRSNKRTEQKIDSEEIS 734
           N++      PL++   K+KE  +P+E    ++  R R + +   +++ E +S
Sbjct: 201 NSSRKNKKAPLEN--HKEKEPLLPKEEKLSEQAKRERDDLKNIMQLEDESVS 250


>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 232

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 561 NIDDGNNATDSEDDVPLKSILKKDKEKQVP--REMSECQKTNRRRSNKRTEQKIDSEEIS 734
           N DD ++  D  DD+ + S  K +++K +   ++     K N R  N      +  E +S
Sbjct: 23  NFDDLDDLDDILDDLDVPSAFKNEEKKNIDEHKQTGNTSKENERIKNDDNLNSLIQEMMS 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,199
Number of Sequences: 5004
Number of extensions: 48451
Number of successful extensions: 201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)