Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_H15
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117195-11|CAB55019.1|  185|Caenorhabditis elegans Hypothetical...   217   7e-57
Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical pr...    29   5.9  
S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.       29   5.9  

>AL117195-11|CAB55019.1|  185|Caenorhabditis elegans Hypothetical
           protein Y57A10A.16 protein.
          Length = 185

 Score =  217 bits (531), Expect = 7e-57
 Identities = 98/167 (58%), Positives = 129/167 (77%)
 Frame = +3

Query: 249 ILDKPLRKGKGEVSLXFYALLFSEIVQYSQNRSHSIQDLQFKLSEIGQDVGTRLLDLYFV 428
           ILDK L +GK E++L  +A+LFSE+V Y+QNRS ++ D+  K++  G+ VG R+ D+  +
Sbjct: 7   ILDKSLSRGKTEINLSTFAVLFSEMVLYAQNRSETVTDIHDKIASYGKQVGLRMFDIITL 66

Query: 429 RERNSKREIKLLNMLLFIKSTLWKVLFGKEADKLEHANDDERTYYIIEKDALVNKFISVP 608
           RE+  KRE KLL ML+FIKST+WK LFGKEADKLE +NDD  TY +IEKD +VN +ISVP
Sbjct: 67  REKGYKRETKLLGMLMFIKSTVWKNLFGKEADKLERSNDDHCTYLLIEKDPMVNTYISVP 126

Query: 609 KDKGSLNCAIFNAGIIEAVLTRSGFPAKVTAHWHKGTTYMVKFDDSV 749
           +DKG LNCA F AGI+EA+L  + F  KVTAHWH GT Y+++FD+SV
Sbjct: 127 RDKGVLNCAAFAAGIVEAILESASFKCKVTAHWHNGTAYVIQFDESV 173


>Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical
           protein R53.3a protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 728 HVCCSLVPVCCHLCWKS 678
           H+ CSL P  CHLC KS
Sbjct: 179 HIHCSLKPFRCHLCPKS 195


>S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.
          Length = 581

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 728 HVCCSLVPVCCHLCWKS 678
           H+ CSL P  CHLC KS
Sbjct: 179 HIHCSLKPFRCHLCPKS 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,736,528
Number of Sequences: 27780
Number of extensions: 340396
Number of successful extensions: 821
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)