Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_H14
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    73   4e-14
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    50   4e-07
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     37   0.004
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    29   0.85 
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    27   2.6  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    26   7.9  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   7.9  

>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 73.3 bits (172), Expect = 4e-14
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
 Frame = +2

Query: 227 SLATNFVFECGIKLGLQPATIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEP 406
           S   NF+   G++L L    +ATA I++H+F+      +Y  Y +   C+  A K  D  
Sbjct: 45  SKGCNFIINVGLRLKLPQTALATANIYFHRFYLRFSLKNYHYYEVAATCIFLATKVEDSV 104

Query: 407 VRLRDAVNVAHNSINRGAGPL--ELGDEYWSWRSAVAQAELLVLRLLGFNLEAPSPHRYL 580
            +LRD V        + +  L  E   EYW WR  +   E ++L  L F+     P+ Y+
Sbjct: 105 RKLRDIVINCAKVAQKNSNVLVDEQTKEYWRWRDVILYTEEVLLEALCFDFTVEHPYPYV 164

Query: 581 LHYLK 595
           L ++K
Sbjct: 165 LSFIK 169


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 10/136 (7%)
 Frame = +2

Query: 227 SLATNFVFECGIKLGLQPATIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEP 406
           +L + ++ E G+ L L    +    I + ++         D   I  AC+    K+ + P
Sbjct: 29  TLGSEWIQEAGVLLNLTQNCVIVCLILFRRYCTLYPPRVPDLDAIVMACVSIGSKTTETP 88

Query: 407 VRLRDAVNVA---------HNSINRGAGPLEL-GDEYWSWRSAVAQAELLVLRLLGFNLE 556
             ++D  NV           N   RG    +L  +E +S R+ ++  EL VLR L F+  
Sbjct: 89  ASVQDICNVVVYLKERFKDTNFEARGFIAHDLYSEEMYSSRNRLSNMELEVLRALNFDTH 148

Query: 557 APSPHRYLLHYLKSLQ 604
              PH+  +HYL++LQ
Sbjct: 149 IVIPHKLAIHYLQTLQ 164


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 26/107 (24%), Positives = 43/107 (40%)
 Frame = +2

Query: 284 TIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHNSINRGAG 463
           T   A + Y +F      N+       TACL  A K  D   + RD + +AH        
Sbjct: 58  TSGLAMLLYSRFQLFFPVNEIPLLECATACLVVASKIEDTAKKFRDIL-LAHYLQKHPGS 116

Query: 464 PLELGDEYWSWRSAVAQAELLVLRLLGFNLEAPSPHRYLLHYLKSLQ 604
            ++   +       +   E + L L+ F+     PH Y++ + KSL+
Sbjct: 117 EVDAHSQ-----KRILGLERMTLELICFDFRVRHPHNYMVKFAKSLK 158


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 506 VAQAELLVLRLLGFNLEAPSPHRYLLHYLKS 598
           + QAE  +LR+L FNL  P+P  +L    K+
Sbjct: 316 ILQAERYILRVLEFNLAYPNPMNFLRRISKA 346


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +1

Query: 25  YREFLKILKK*SDCLVVWYFCKHWKLKYIFKYRLNN 132
           Y EF KIL     C+   YF K++ +KYI K  LNN
Sbjct: 188 YEEFYKIL-----CI---YFPKNYDIKYIMKSVLNN 215


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 25  YREFLKILKK*SDCLVVWYFCKHWKLKYIF 114
           ++E L I+++  D + VWY C  W L+  F
Sbjct: 36  FQEELDIIEELDDPVDVWYRCIEWLLETRF 65


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 7/31 (22%), Positives = 21/31 (67%)
 Frame = +2

Query: 578 LLHYLKSLQEWFPVAQWRSAPIARMAMAFLQ 670
           +L+++ SL  W  ++ W ++ +++++  +LQ
Sbjct: 49  VLYFVNSLLSWCMLSSWFNSKLSKLSAGYLQ 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,338,838
Number of Sequences: 5004
Number of extensions: 64982
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)