Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_H14
(860 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0032 + 14112354-14112417,14112471-14112549,14114435-141145... 56 4e-08
11_01_0357 + 2715271-2715509,2716200-2716281,2717117-2717251,271... 55 6e-08
02_01_0262 - 1734447-1735090,1735219-1735367,1735458-1735633,173... 47 2e-05
12_02_0362 + 17998110-17998345,17998877-17998958,18000309-180003... 47 2e-05
01_04_0064 - 15600467-15600528,15600606-15600647,15600732-156011... 46 5e-05
04_04_0807 - 28192320-28192494,28192611-28192759,28192882-281929... 31 1.2
12_02_0226 + 15887835-15891188 29 4.8
06_03_0145 - 17226442-17226540,17226740-17226844,17227914-17228261 29 4.8
06_03_1476 - 30399317-30399347,30399636-30399722,30400035-304001... 29 6.3
12_01_0313 + 2388488-2388560,2389285-2389462,2390221-2390331,239... 28 8.3
08_02_1630 - 28371925-28372407,28372514-28372714,28372797-28374242 28 8.3
>02_03_0032 +
14112354-14112417,14112471-14112549,14114435-14114551,
14114721-14114802,14115734-14115868,14115948-14116123,
14116219-14116370,14116433-14117622
Length = 664
Score = 56.0 bits (129), Expect = 4e-08
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Frame = +2
Query: 230 LATNFVFECGIKLGLQPATIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPV 409
L +F+ + GI+L L TIATA +F H+F+ I T C+ A K D P
Sbjct: 73 LYCSFIRDVGIRLKLPQMTIATAIMFCHRFYLYQSLAKNGWQTIATVCIFLASKVEDTPC 132
Query: 410 RLRDAVNVAHNSINR----GAGPLELGDEYWSWRSAVAQAELLVLRLLGFNLEAPSPHRY 577
L + VA+ ++ R A + D + ++ + E LVL + F+ P+R
Sbjct: 133 PLDQVIRVAYGTMYRRDPATARRIHQKDVFEKQKALILTGERLVLTTVRFDFNIQHPYRP 192
Query: 578 LLHYLKSL 601
LL ++ L
Sbjct: 193 LLDAMEKL 200
>11_01_0357 +
2715271-2715509,2716200-2716281,2717117-2717251,
2717428-2717457,2717486-2717661,2717743-2717894,
2718395-2719083
Length = 500
Score = 55.2 bits (127), Expect = 6e-08
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 14/160 (8%)
Frame = +2
Query: 242 FVFECGIKLGLQPATIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRD 421
F+ + G++L + TIATA +F H+FF D I T C+ AGK + P L+D
Sbjct: 70 FLQDLGMRLKVPQVTIATAIVFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKD 129
Query: 422 AVNVAHNSINRGAGP--------------LELGDEYWSWRSAVAQAELLVLRLLGFNLEA 559
+ +++ I++ +E + Y + + E +VL LGF+L
Sbjct: 130 VILISYEIIHKKDAAAVQRIKQKSLDYFGVEWQEVYEQQKELILLGERVVLVTLGFDLNV 189
Query: 560 PSPHRYLLHYLKSLQEWFPVAQWRSAPIARMAMAFLQDSI 679
P++ L+ +K F VAQ +A++A F+ D +
Sbjct: 190 HHPYKPLVEAIKK----FKVAQ---NALAQVAWNFVNDGL 222
>02_01_0262 -
1734447-1735090,1735219-1735367,1735458-1735633,
1735719-1735853,1737039-1737120,1737307-1737461
Length = 446
Score = 47.2 bits (107), Expect = 2e-05
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Frame = +2
Query: 239 NFVFECGIKLGLQPATIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLR 418
+F+ + G++L L TIATA + H+F+ + + T C+ A K D P L+
Sbjct: 41 SFIRDVGLRLQLPQVTIATATLLCHRFYLRQSHAKNEWQTVATVCVFLASKIEDTPCPLQ 100
Query: 419 DAVNVAHNSINR----GAGPLELGDEYWSWRSAVAQAELLVLRLLGFNLEAPSPHRYLLH 586
+ VA+ ++ R A + + + + E L+L + F+ P+ L
Sbjct: 101 RVIIVAYETMYRKDCNAAHRIYQKEVLEKQKELILVGETLLLSTIRFDFNIQHPYEPLKL 160
Query: 587 YLKSL 601
LK L
Sbjct: 161 ALKKL 165
>12_02_0362 +
17998110-17998345,17998877-17998958,18000309-18000392,
18000600-18000734,18001395-18001570,18001654-18001805,
18003730-18004575,18004961-18005301
Length = 683
Score = 46.8 bits (106), Expect = 2e-05
Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 4/127 (3%)
Frame = +2
Query: 311 HKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHNSINR---GAGP-LELG 478
+KF +++ + I T C+ AGK + P L+D + V++ I++ AG ++
Sbjct: 120 YKFLLPMERDSIVVHTIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAGQRIKQK 179
Query: 479 DEYWSWRSAVAQAELLVLRLLGFNLEAPSPHRYLLHYLKSLQEWFPVAQWRSAPIARMAM 658
+ Y + + AE +VL LGF+L P++ L+ ++ F VAQ +A++A
Sbjct: 180 EVYDQQKELILLAERVVLATLGFDLNVHHPYKPLVEAIRK----FKVAQ---NALAQVAW 232
Query: 659 AFLQDSI 679
F+ D +
Sbjct: 233 NFVNDGL 239
>01_04_0064 -
15600467-15600528,15600606-15600647,15600732-15601107,
15601186-15601447,15602992-15603158,15603344-15603484,
15603575-15603643
Length = 372
Score = 45.6 bits (103), Expect = 5e-05
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Frame = +2
Query: 287 IATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHN-SINRGAG 463
+ATA + +H+F+ + + + +C+ AGK + P R + + V H R
Sbjct: 1 MATAQVLFHRFYCKKSFVRFSVKRVAASCVWLAGKLEESPRRSKHIIIVFHRMECRRENV 60
Query: 464 PLE----LGDEYWSWRSAVAQAELLVLRLLGFNLEAPSPHRYLLHYLKSLQ 604
P+E +Y + + + E +L+ +GF PH+++ +YL +L+
Sbjct: 61 PIEHLDVFSKKYSDLKHDLVRTERHLLKEMGFICHVEHPHKFISNYLATLE 111
>04_04_0807 -
28192320-28192494,28192611-28192759,28192882-28192980,
28193212-28193433,28193522-28193611,28193837-28193959,
28194040-28194199,28194288-28194347,28194484-28194574,
28194667-28194730
Length = 410
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 497 RSAVAQAELLVLRLLGFNLEAPSPHRYLLHYLKSLQ 604
+ + + E L+L L FN+ P+P+ ++ +LK+ Q
Sbjct: 264 KGQILEMEKLILNTLQFNMSVPTPYVFMRRFLKAAQ 299
>12_02_0226 + 15887835-15891188
Length = 1117
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 341 DYDCYVICTACLCAAGKSRDEPVRLRDAVN 430
D++ Y + +CLC AG+S D + D +N
Sbjct: 1036 DFETYSMFMSCLCKAGRSEDGLQLIHDMLN 1065
>06_03_0145 - 17226442-17226540,17226740-17226844,17227914-17228261
Length = 183
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = +2
Query: 350 CYVICTACLCAAGKSRDEPVRLRDAVNVAHNSINRGAGPLELGDEYWSWRSAVAQAELLV 529
C++I A AG+S P+R R A S+ GA E+ DE + S+ A
Sbjct: 19 CFLIALAGAALAGRSSRSPLRRRPAALGCAASLAAGAAK-EIADEAGFFGSSGASLRDAA 77
Query: 530 LRLLGFNLEA 559
L+G L A
Sbjct: 78 ADLVGATLAA 87
>06_03_1476 -
30399317-30399347,30399636-30399722,30400035-30400192,
30400276-30400497,30400744-30400881,30400977-30401105,
30401346-30401369,30401569-30401614,30401692-30401773,
30401836-30401955,30402039-30402072
Length = 356
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +2
Query: 497 RSAVAQAELLVLRLLGFNLEAPSPHRYLLHYLKSLQEWFPVAQ 625
R+ + + E +++ L F++ P+P+ ++ +LK+ Q V Q
Sbjct: 259 RTDILEMERMIVNTLQFDMSVPTPYCFMRRFLKAAQSDKKVGQ 301
>12_01_0313 +
2388488-2388560,2389285-2389462,2390221-2390331,
2391280-2391362,2391826-2392027,2392078-2392101,
2392234-2392408,2392482-2392683,2393897-2394036
Length = 395
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 19 HHYREFLKILKK*SDCLVVWYFCKHWKLKYIFKYR 123
HHY F +K DC + + K+KY FKYR
Sbjct: 306 HHYN-FTVEMKNDKDCWIPRVYFAEVKMKYGFKYR 339
>08_02_1630 - 28371925-28372407,28372514-28372714,28372797-28374242
Length = 709
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 326 EADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHNSINRGA 460
+ D+ D +V AC C+ GKS DE V + D H+ GA
Sbjct: 637 DGDEMQPDAWV--GACTCSDGKSSDEFVSIEDDQLAIHSENEAGA 679
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,577,439
Number of Sequences: 37544
Number of extensions: 426048
Number of successful extensions: 1106
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -