Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_H14
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83226-1|CAB05724.2|  252|Caenorhabditis elegans Hypothetical pr...    45   6e-05
Z78012-6|CAB01416.1|  480|Caenorhabditis elegans Hypothetical pr...    41   0.001
AY557405-1|AAS64750.1|  480|Caenorhabditis elegans cyclin L prot...    41   0.001
L23648-4|AAA28033.2|  555|Caenorhabditis elegans Cyclin t protei...    40   0.003
L23648-3|AAN63386.1|  438|Caenorhabditis elegans Cyclin t protei...    39   0.004
L23648-1|AAA28034.1|  468|Caenorhabditis elegans Cyclin t protei...    39   0.004
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ...    31   1.4  
Z47812-6|CAC70105.1|  984|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z46794-3|CAA86783.1|  429|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>Z83226-1|CAB05724.2|  252|Caenorhabditis elegans Hypothetical
           protein F43D2.1 protein.
          Length = 252

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 2/145 (1%)
 Frame = +2

Query: 251 ECGIKLGLQPA-TIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAV 427
           E G  L  +P  TI  AA+++H+F+       +   V   +CL  AGK  D P + +D  
Sbjct: 39  EVGNALNCKPRPTIGVAAVYFHRFYMIHSFQSFSREVTALSCLFLAGKVEDFPKKCKDVC 98

Query: 428 NVAHNSINRGAGPLELGDEYWSWRSAVAQAELLVLRLLGFNLEAPSPHRYLLHYLKSLQE 607
             A           E+  +Y +    V   E ++L  L F+L    P+  LL Y    + 
Sbjct: 99  QAAVTHYP------EIYSKYQNLVDDVMGLERVLLHSLKFDLHVALPYDALLDY----KM 148

Query: 608 WFP-VAQWRSAPIARMAMAFLQDSI 679
            FP + + +     ++A  F+ DSI
Sbjct: 149 MFPDMNREKITDAVQIAWTFINDSI 173


>Z78012-6|CAB01416.1|  480|Caenorhabditis elegans Hypothetical
           protein C52E4.6a protein.
          Length = 480

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 16/136 (11%)
 Frame = +2

Query: 230 LATNFVFECGIKLGLQPATIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPV 409
           L    + +  I L L     AT  I + +++ +     Y       ACL  A K  +EP 
Sbjct: 108 LGCELIQQGAILLKLPQTAAATGQILFQRYYYQKSFVRYHFEHAVQACLLLASKIEEEPR 167

Query: 410 RLRDAVNVAH------------NSIN----RGAGPLELGDEYWSWRSAVAQAELLVLRLL 541
           R R+  NV H            + IN    RG  P  +   Y + +  +  +E  +L  L
Sbjct: 168 RPREVYNVFHRLERLHRLQQSGHDINKETTRGMKPPAVDMNYINTKQHMINSERRILATL 227

Query: 542 GFNLEAPSPHRYLLHY 589
           GF +    PHR ++ Y
Sbjct: 228 GFVVHVKHPHRLIVAY 243


>AY557405-1|AAS64750.1|  480|Caenorhabditis elegans cyclin L
           protein.
          Length = 480

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 16/136 (11%)
 Frame = +2

Query: 230 LATNFVFECGIKLGLQPATIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPV 409
           L    + +  I L L     AT  I + +++ +     Y       ACL  A K  +EP 
Sbjct: 108 LGCELIQQGAILLKLPQTAAATGQILFQRYYYQKSFVRYHFEHAVQACLLLASKIEEEPR 167

Query: 410 RLRDAVNVAH------------NSIN----RGAGPLELGDEYWSWRSAVAQAELLVLRLL 541
           R R+  NV H            + IN    RG  P  +   Y + +  +  +E  +L  L
Sbjct: 168 RPREVYNVFHRLERLHRLQQSGHDINKETTRGMKPPAVDMNYINTKQHMINSERRILATL 227

Query: 542 GFNLEAPSPHRYLLHY 589
           GF +    PHR ++ Y
Sbjct: 228 GFVVHVKHPHRLIVAY 243


>L23648-4|AAA28033.2|  555|Caenorhabditis elegans Cyclin t protein
           1.2, isoform a protein.
          Length = 555

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 22/104 (21%), Positives = 46/104 (44%)
 Frame = +2

Query: 296 AAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHNSINRGAGPLEL 475
           AA  +++FF        D   +  AC+  AGK+ D P +L+  V              + 
Sbjct: 77  AATLFNRFFNVHSLKRCDFRDVAAACVFLAGKNEDAPKKLKYVVTQLWQFKYPHNKQFQS 136

Query: 476 GDEYWSWRSAVAQAELLVLRLLGFNLEAPSPHRYLLHYLKSLQE 607
              +    + V   E ++L+ + F++    PH+Y+L  ++ +++
Sbjct: 137 EQHFLDQCNVVTLIEDVLLKTISFDINVDLPHQYVLKLMRDVEK 180


>L23648-3|AAN63386.1|  438|Caenorhabditis elegans Cyclin t protein
           1.1, isoform b protein.
          Length = 438

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 26/115 (22%), Positives = 49/115 (42%)
 Frame = +2

Query: 263 KLGLQPATIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHN 442
           K+ +    +  A    H+F+       YD   +  AC+  AGKS++ P +L   ++V   
Sbjct: 67  KMKIGHTGLCVAHTHMHRFYYLHSFKKYDYRDVGAACVFLAGKSQECPRKLSHVISVWRE 126

Query: 443 SINRGAGPLELGDEYWSWRSAVAQAELLVLRLLGFNLEAPSPHRYLLHYLKSLQE 607
             +R     E           +   E ++L+ + F+L    PH Y+L  +K + +
Sbjct: 127 RKDRKQLTTETARN--EAAQIIVLLESMILQTIAFDLNVHLPHIYVLDIMKKVDK 179


>L23648-1|AAA28034.1|  468|Caenorhabditis elegans Cyclin t protein
           1.1, isoform a protein.
          Length = 468

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 26/115 (22%), Positives = 49/115 (42%)
 Frame = +2

Query: 263 KLGLQPATIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHN 442
           K+ +    +  A    H+F+       YD   +  AC+  AGKS++ P +L   ++V   
Sbjct: 67  KMKIGHTGLCVAHTHMHRFYYLHSFKKYDYRDVGAACVFLAGKSQECPRKLSHVISVWRE 126

Query: 443 SINRGAGPLELGDEYWSWRSAVAQAELLVLRLLGFNLEAPSPHRYLLHYLKSLQE 607
             +R     E           +   E ++L+ + F+L    PH Y+L  +K + +
Sbjct: 127 RKDRKQLTTETARN--EAAQIIVLLESMILQTIAFDLNVHLPHIYVLDIMKKVDK 179


>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
            protein ZC123.3 protein.
          Length = 1623

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 1/113 (0%)
 Frame = +2

Query: 140  LQVKDLVDVMALQNRREKRVPDYRGAPNHSLATNFVFECGIKLGLQPATIATAAIFYHKF 319
            LQ+   V V+  QN R+K    Y   PNH  +  FV   G     +       +  + ++
Sbjct: 1076 LQLSPRVIVVWFQNARQKARKIYENQPNHESSDRFVRTPGSNFQCK-----RCSQVFQRY 1130

Query: 320  FKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVN-VAHNSINRGAGPLEL 475
            ++        CY    A L +  KS +E +   +    +A   + + A  LEL
Sbjct: 1131 YELIQHQQKKCYKDDVAALASDNKSVEESLTEEEKSQLLAQQQVAQLASTLEL 1183


>Z47812-6|CAC70105.1|  984|Caenorhabditis elegans Hypothetical
           protein T05H10.5b protein.
          Length = 984

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 263 KLGLQPATIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAV 427
           K GLQP  I+ A++F+  F  + +  D+      T+     GKS D  +R  DA+
Sbjct: 6   KAGLQPMDISDASVFF--FQADVESKDF-----LTSLFDCEGKSDDRMLRYADAI 53


>Z46794-3|CAA86783.1|  429|Caenorhabditis elegans Hypothetical
           protein R06F6.4 protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 365 CRLRSSRNHSCRPL*RIC 312
           C   S+ NHSC+PL R+C
Sbjct: 170 CIKLSAANHSCKPLTRVC 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,587,001
Number of Sequences: 27780
Number of extensions: 371549
Number of successful extensions: 911
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)