Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_H13
(863 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0148 - 21214460-21214561,21214993-21215339,21215428-212155... 65 8e-11
09_04_0232 - 15882589-15882720,15882799-15882889,15882987-158830... 38 0.010
02_05_0509 - 29630224-29630328,29630408-29630500,29630669-296307... 38 0.010
06_03_0789 + 24630552-24631171,24631240-24631279,24632422-246324... 35 0.096
11_01_0318 - 2373511-2375073 31 1.2
05_04_0387 - 20834510-20834978,20836866-20837329,20837458-20837634 29 6.3
08_02_0869 - 22031889-22032017,22032114-22032204,22032289-220323... 28 8.4
02_04_0465 - 23146332-23146367,23146786-23146858,23147200-231472... 28 8.4
>09_06_0148 -
21214460-21214561,21214993-21215339,21215428-21215538,
21215673-21215835,21215921-21215999,21216110-21216228
Length = 306
Score = 64.9 bits (151), Expect = 8e-11
Identities = 32/93 (34%), Positives = 55/93 (59%)
Frame = +1
Query: 325 EISDDPQRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKL 504
E+++D R F+D L F GT +P++ +DL+ LY V +RGGL +V+ ++
Sbjct: 16 EVAND--RAAFMDTLRRFHSLMGTKF-MIPVIGGKEMDLHALYVEVTSRGGLAKVMEERK 72
Query: 505 WQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYE 603
W+E++ P++ TSA++ LR Y+ L+ YE
Sbjct: 73 WREVMARFSFPATTTSASYVLRRYYLSLLHHYE 105
>09_04_0232 -
15882589-15882720,15882799-15882889,15882987-15883087,
15883494-15883592,15883693-15883830,15883918-15884508,
15884819-15884989,15885068-15885203,15885561-15885592,
15886280-15886336,15886434-15886686,15886762-15886850,
15887181-15887234,15887498-15887689,15887777-15887938
Length = 765
Score = 37.9 bits (84), Expect = 0.010
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Frame = +1
Query: 349 KEFLDDLFSFMQKRG----TPINRLPIMAKSVL-----DLYELYNLVIARGGLVEVINKK 501
++FL D+ F+ +RG P L ++VL DLY LY V++RGG V N
Sbjct: 580 EDFLKDVMQFLIQRGHNRLVPHGGLAEFPEAVLNAKRLDLYNLYKEVVSRGGFY-VGNGI 638
Query: 502 LWQ-EIIKGLR---LPSSITSAAFTLRTQYMKYLYDYE 603
W+ ++ +R + + +T TL+ Y YL +YE
Sbjct: 639 NWKGQVFSKMRNHTVTNRMTGVGNTLKRHYETYLLEYE 676
>02_05_0509 -
29630224-29630328,29630408-29630500,29630669-29630719,
29630864-29630930,29631181-29631227,29631300-29631350,
29631433-29631552,29632777-29632869,29633440-29633485,
29633577-29633629,29633800-29633839,29633938-29634623
Length = 483
Score = 37.9 bits (84), Expect = 0.010
Identities = 23/89 (25%), Positives = 44/89 (49%)
Frame = +1
Query: 337 DPQRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEI 516
+ ++ F+ +L F ++ G K L+ +L+ V GG +V KLW+++
Sbjct: 194 EEEQAAFMVELERFHREHGLEFKPPKFYGKG-LNCLKLWRQVAHLGGHEQVTICKLWRQV 252
Query: 517 IKGLRLPSSITSAAFTLRTQYMKYLYDYE 603
+ R P + T+ +++ R Y K L +YE
Sbjct: 253 GETFRPPKTCTTVSWSFRIFYEKALLEYE 281
>06_03_0789 +
24630552-24631171,24631240-24631279,24632422-24632486,
24632615-24632660,24633222-24633314,24633736-24633855,
24633931-24633982,24634051-24634123,24634350-24634416,
24634670-24634720,24635026-24635118,24635207-24635308
Length = 473
Score = 34.7 bits (76), Expect = 0.096
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 484 EVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLS----TRSELDAAI 651
+V + KLW+++ + + P + T+ ++T R Y K L +YE K S L I
Sbjct: 224 QVTSCKLWRQVGESFKPPKTCTTVSWTFRNFYEKALLEYEKHKIETGEFQVAASNLTERI 283
Query: 652 EGNKREGRRASG 687
+ G ASG
Sbjct: 284 TSESQVGIHASG 295
>11_01_0318 - 2373511-2375073
Length = 520
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 498 ETLAGDN*GTPAAVFY-HVRCLHFTHSIYEISIRL 599
E AGD T AA+ Y H++ LH+TH++ ++RL
Sbjct: 342 EAEAGDGGETGAAITYEHLKGLHYTHAVLHENMRL 376
>05_04_0387 - 20834510-20834978,20836866-20837329,20837458-20837634
Length = 369
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 601 ECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRGVRASLAQLSSTCSRS 780
E +K L + + L A G +R RA ++ + PPL R V +L +L S C +
Sbjct: 146 EFKKPVLYSSTGLGEAAGGGRR---RAFAEFSSCVVRKAPPLERRVECTLEELCSGCKKE 202
Query: 781 L 783
+
Sbjct: 203 V 203
>08_02_0869 -
22031889-22032017,22032114-22032204,22032289-22032389,
22033262-22033303,22033393-22033491,22033616-22033753,
22033853-22034428,22034897-22035070,22035155-22035290,
22035694-22035725,22036873-22037125,22037216-22037304,
22037771-22037824,22038801-22038992,22039065-22039229
Length = 756
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Frame = +1
Query: 349 KEFLDDLFSFMQKRG----TPINRLPIMAKSVL-----DLYELYNLVIARGG 477
++FL D+ F+ +RG P L +VL DLY LY V++RGG
Sbjct: 558 EDFLKDVMQFLLQRGHTRLVPQGGLAEFPDAVLNAKRLDLYNLYKEVVSRGG 609
>02_04_0465 -
23146332-23146367,23146786-23146858,23147200-23147267,
23147588-23147675,23147845-23147932,23148439-23148535,
23148645-23148752,23148916-23149032,23149132-23149260
Length = 267
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 707 AAWASYCPEARLPSRLLPSIAASNSLRV 624
AAW+S C RL RLLPS S +R+
Sbjct: 24 AAWSSSCRSRRLRPRLLPSKRWSGVVRM 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,644,558
Number of Sequences: 37544
Number of extensions: 433305
Number of successful extensions: 1192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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