Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_H13
         (863 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   6.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   8.4  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   8.4  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 236 SWRSNRIRAPSTLS 277
           SWR +R+R P  +S
Sbjct: 60  SWRDSRLRLPENMS 73


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 540 FYHVRCLHFTHSIYEISIRL 599
           FYH   L F   IYE  I+L
Sbjct: 346 FYHPEDLPFIKDIYETVIKL 365


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 540 FYHVRCLHFTHSIYEISIRL 599
           FYH   L F   IYE  I+L
Sbjct: 52  FYHPEDLPFIKDIYETVIKL 71


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 140 AKFQMCDSKHVHCVKVW 90
           A  +MCD  H+   K+W
Sbjct: 212 AVMKMCDILHLRHTKIW 228


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +1

Query: 409 LPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEII---KGLRLPSSITSAAFTL 567
           +P++   ++ +Y L   V+  GGL E     L++  +    GL +  S  +A F +
Sbjct: 56  IPVVMAGIIAIYGLVVAVLIAGGLEEPKGYTLFKGFVHLGAGLAVGFSGLAAGFAI 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,071
Number of Sequences: 438
Number of extensions: 3850
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)